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(-) Description

Title :  BTK1 BINDS COVALENTLY TO HY-15771 ONO-4059
 
Authors :  A. S. Gardberg
Date :  20 Sep 16  (Deposition) - 24 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.41
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Kinase-Ligand Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. T. Bender, A. Gardberg, A. Pereira, T. Johnson, Y. Wu, R. Grenningloh, J. Head, F. Morandi, P. Haselmayer, L. Liu-Bujalski
Ability Of Bruton'S Tyrosine Kinase Inhibitors To Sequester Y551 And Prevent Phosphorylation Determines Potency For Inhibition Of Fc Receptor But Not B-Cell Receptor Signaling
Mol. Pharmacol. V. 91 208 2017
PubMed-ID: 28062735  |  Reference-DOI: 10.1124/MOL.116.107037

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE BTK
    ChainsA
    EC Number2.7.10.2
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System StrainHI5
    Expression System Taxid7111
    FragmentKINASE DOMAIN
    GeneBTK, AGMX1, ATK, BPK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR KINASE,BPK,BRUTON TYROSINE KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
17GB1Ligand/Ion6-AZANYL-9-[(3~{R})-1-[(~{E})-BUT-2-ENOYL]PYRROLIDIN-3-YL]-7-(4-PHENOXYPHENYL)PURIN-8-ONE
2DMS1Ligand/IonDIMETHYL SULFOXIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:408 , THR A:410 , GLY A:411 , GLN A:412 , VAL A:416 , ALA A:428 , LYS A:430 , MET A:449 , THR A:474 , GLU A:475 , MET A:477 , CYS A:481 , ARG A:525 , CYS A:527 , LEU A:528 , SER A:538 , ASP A:539 , HOH A:818 , HOH A:925binding site for residue 7GB A 701
2AC2SOFTWARETHR A:403 , PHE A:404 , TYR A:627 , THR A:628 , TYR A:631binding site for residue DMS A 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5P9M)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:468 -Pro A:469

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5P9M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5P9M)

(-) Exons   (0, 0)

(no "Exon" information available for 5P9M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.eeeeeeeeee..eeeeeeee...eeeeeeee.....hhhhhhhhhhhhhh........eeeee.....eeeee......hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5p9m A 389 GLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDEES 659
                                   398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5P9M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5P9M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5P9M)

(-) Gene Ontology  (49, 49)

Asymmetric/Biological Unit(hide GO term definitions)

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    Arg A:468 - Pro A:469   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BTK_HUMAN | Q061871aww 1awx 1b55 1btk 1bwn 1k2p 1qly 2ge9 2z0p 3gen 3k54 3ocs 3oct 3p08 3pix 3piy 3piz 3pj1 3pj2 3pj3 4nwm 4ot5 4ot6 4otf 4otq 4otr 4rfy 4rfz 4rg0 4rx5 4yhf 4z3v 4zly 4zlz 5bpy 5bq0 5fbn 5fbo 5j87 5jrs 5kup 5p9f 5p9g 5p9h 5p9i 5p9j 5p9k 5p9l 5t18 5u9d 5vgo

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5P9M)