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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1 (HHINT1) CRYSTALLIZED AT P212121 SPACE GROUP, AND REFINED TO 1.27 A
 
Authors :  R. M. Dolot, A. Seda, B. C. Nawrot
Date :  13 Jun 17  (Deposition) - 28 Jun 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.27
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Phosphoramidase, Desulfurase, Tumour Suppressor, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. M. Dolot, A. Seda, B. C. Nawrot
Differences In Crystal Packing As The Key Factor For Stabilization Of The N-Terminal Fragment Of Hhint1 Protein
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1
    ChainsA, B
    EC Number3.-.-.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPSGA02
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneHINT1, HINT, PKCI1, PRKCNH1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsFIRST ELEVEN AMINO ACID RESIDUES ARE NOT VISIBLE ON ELECTRON DENSITY MAPS
    SynonymADENOSINE 5'-MONOPHOSPHORAMIDASE,PROTEIN KINASE C INHIBITOR 1,PROTEIN KINASE C-INTERACTING PROTEIN 1,PKCI-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:123 , PHE B:19 , ILE B:22 , HIS B:42 , ASP B:43 , ILE B:44 , SER B:45 , LEU B:53 , ASN B:99 , GLY B:105 , GLN B:106 , SER B:107 , VAL B:108 , HIS B:112 , HIS B:114 , HOH B:319 , HOH B:338 , HOH B:366 , HOH B:410binding site for residue ADP B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5O8I)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Trp A:123 -Pro A:124
2Trp B:123 -Pro B:124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5O8I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5O8I)

(-) Exons   (0, 0)

(no "Exon" information available for 5O8I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhh......eeee...eeeee.......eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeehhhhh.......eeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 5o8i A  12 RPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126
                                    21        31        41        51        61        71        81        91       101       111       121     

Chain B from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhh......eeee...eeeee.......eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeehhhhh.......eeeee......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 5o8i B  11 ARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126
                                    20        30        40        50        60        70        80        90       100       110       120      

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5O8I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5O8I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5O8I)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HINT1_HUMAN | P497731av5 1kpa 1kpb 1kpc 1kpe 1kpf 3tw2 4eqe 4eqg 4eqh 4zkl 4zkv 5ed3 5ed6 5emt 5i2e 5i2f 5ipb 5ipc 5ipd 5ipe 5kly 5klz 5km0 5km1 5km2 5km3 5km4 5km6 5km7 5kma 5kmb 5kmc 5o8g

(-) Related Entries Specified in the PDB File

1kpb 1KPB CONTAINS THE SAME PROTEIN REFINED TO LOWER RESOLUTION (2.0 A)