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(-) Description

Title :  CRYSTAL STRUCTURE OF WNK3 KINASE DOMAIN IN A MONOPHOSPHORYLATED STATE WITH CHLORIDE BOUND IN THE ACTIVE SITE
 
Authors :  D. M. Pinkas, J. C. Bufton, K. Kupinska, D. Wang, M. Fairhead, R. Chalk, G. Berridge, N. A. Burgess-Brown, F. Von Delft, C. H. Arrowsmith, A. M C. Bountra, A. Bullock, Structural Genomics Consortium (Sgc)
Date :  19 May 17  (Deposition) - 28 Jun 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Wnk3, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Pinkas, G. M. Daubner, J. C. Bufton, S. G. Bartual, C. E. Sanvitale D. R. Alessi, A. Bullock
Crystal Structure Of Wnk3 Kinase Domain In A Monophosphorylated State With Chloride Bound In The Active Site
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE WNK3
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 132-414
    Gene: WNK3, KIAA1566, PRKWNK3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN KINASE LYSINE-DEFICIENT 3,PROTEIN KINASE WITH NO LYSINE 3

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2EDO16Ligand/Ion1,2-ETHANEDIOL
3SEP2Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO8Ligand/Ion1,2-ETHANEDIOL
3SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 2 (2, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO8Ligand/Ion1,2-ETHANEDIOL
3SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:159 , ASP A:294 , GLY A:296 , LEU A:297 , HOH A:739binding site for residue CL A 501
02AC2SOFTWAREARG A:155 , THR A:160 , LYS A:218 , EDO A:503binding site for residue EDO A 502
03AC3SOFTWARETHR A:160 , GLU A:177 , EDO A:502 , HOH A:610 , HOH A:616binding site for residue EDO A 503
04AC4SOFTWARESER A:252 , TRP A:253 , THR A:287 , GLY A:288binding site for residue EDO A 504
05AC5SOFTWAREGLY A:285 , PRO A:286 , THR A:287 , GLY A:288binding site for residue EDO A 505
06AC6SOFTWARELYS A:307 , SER A:308 , GLY A:311 , MET A:316 , TYR A:321binding site for residue EDO A 506
07AC7SOFTWAREGLU A:214 , TYR A:358 , THR A:362 , HOH A:650binding site for residue EDO A 507
08AC8SOFTWAREVAL A:361 , ILE A:365 , LYS A:366 , ILE A:386 , GLN A:388 , HOH A:631binding site for residue EDO A 508
09AC9SOFTWAREPRO A:313 , MET A:316 , TYR A:321 , ILE A:357binding site for residue EDO A 509
10AD1SOFTWARELYS B:159 , ASP B:294 , GLY B:296 , LEU B:297binding site for residue CL B 501
11AD2SOFTWAREGLU B:177 , SER B:215 , ILE B:216 , HOH B:638binding site for residue EDO B 502
12AD3SOFTWAREASP B:180 , ARG B:181 , LEU B:183 , GLN B:188 , LYS B:220 , LYS B:221binding site for residue EDO B 503
13AD4SOFTWARELEU B:183 , GLU B:187 , ARG B:190 , PHE B:191 , GLU B:194 , THR B:299 , THR B:303binding site for residue EDO B 504
14AD5SOFTWAREGLU B:214 , TYR B:358binding site for residue EDO B 505
15AD6SOFTWARETYR B:238 , PHE B:242binding site for residue EDO B 506
16AD7SOFTWARESER B:252 , TRP B:253 , THR B:287 , GLY B:288binding site for residue EDO B 507
17AD8SOFTWAREPRO B:313 , MET B:316 , PRO B:318 , TYR B:321 , ILE B:357binding site for residue EDO B 508
18AD9SOFTWAREPRO B:313 , GLU B:314 , CYS B:351 , GLN B:352 , HOH B:659binding site for residue EDO B 509

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5O21)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Thr A:268 -Pro A:269
2Thr B:268 -Pro B:269

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5O21)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5O21)

(-) Exons   (0, 0)

(no "Exon" information available for 5O21)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeee..eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeeeeeee..eeeeeeeee.....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..........hhh.eee......eee.hhhhhhhhhhhhhhhhhh.....hhhhhh....hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...hhhhhhh.hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5o21 A 135 MKAVATSPSGRFLKFDIELGRGAFKTVYKGLDTETWVEVAWCELQDRKLTKAEQQRFKEEAEMLKGLQHPNIVRFYDSWESILKGKKCIVLVTELMTSGTLKTYLKRFKVMKPKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLMRTsFAKSVIGTPEFMAPEMYEEHYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRKVTSGIKPASFNKVTDPEVKEIIEGCIRQNKSERLSIRDLLNHAFFAE 407
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404   
                                                                                                                                                                                                   304-SEP                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....eeeeeeeeeee..eeeeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhh........eeeeeeeee..eeeeeeeee.....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..............eee......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...hhhhhhh.hhhhhhhhhhhh........hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5o21 B 135 MKAVATSPSGRFLKFDIELGRGAFKTVYKGLDTETWVEVAWCELQDRKLTKAEQQRFKEEAEMLKGLQHPNIVRFYDSWESILKGKKCIVLVTELMTSGTLKTYLKRFKVMKPKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLMRTsFAKSVIGTPEFMAPEMYEEHYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRKVTSGIKPASFNKVTDPEVKEIIEGCIRQNKSERLSIRDLLNHAFFAED 408
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404    
                                                                                                                                                                                                   304-SEP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5O21)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5O21)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5O21)

(-) Gene Ontology  (27, 27)

Asymmetric Unit(hide GO term definitions)

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        WNK3_HUMAN | Q9BYP7: 5nkp 5o1v 5o23 5o26 5o2b 5o2c

(-) Related Entries Specified in the PDB File

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