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(-) Description

Title :  CRYSTAL STRUCTURE OF DNA CROSS-LINK REPAIR PROTEIN 1A IN COMPLEX WITH CEFOTAXIME
 
Authors :  J. A. Newman, H. Aitkenhead, K. Kupinska, N. A. Burgess-Brown, R. Talon T. Krojer, F. Von Delft, C. H. Arrowsmith, A. Edwards, C. Bountra, O. G
Date :  15 May 17  (Deposition) - 14 Jun 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Exonulcease, Cephalosporin, Cross-Link Repair, Dclre1A, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. A. Newman, H. Aitkenhead, K. Kupinska, N. A. Burgess-Brown, R. Talon, T. Krojer, F. Von Delft, C. H. Arrowsmith, A. Edwards, C. Bountra, O. Gileadi
To Be Published
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA CROSS-LINK REPAIR 1A PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    GeneDCLRE1A, KIAA0086, SNM1, SNM1A
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSNM1 HOMOLOG A,HSNM1A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CE32Ligand/Ion(6R,7R)-3-(ACETYLOXYMETHYL)-7-[[(2Z)-2-(2-AMINO-1,3-THIAZOL-4-YL)-2-METHOXYIMINO-ETHANOYL]AMINO]-8-OXO-5-THIA-1-AZABICYCLO[4.2.0]OCT-2-ENE-2-CARBOXYLIC ACID
2NI1Ligand/IonNICKEL (II) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:732 , HIS A:734 , HIS A:793 , ASP A:815 , HOH A:1254 , HOH A:1396binding site for residue NI A 1101
2AC2SOFTWAREALA A:828 , GLN A:830 , LYS A:831 , HIS A:833 , ILE A:937 , ASN A:938 , PHE A:939 , ARG A:960 , THR A:962 , GLN A:979 , ILE A:986 , GLY A:988 , HOH A:1230 , HOH A:1260 , HOH A:1314 , HOH A:1331 , HOH A:1363binding site for residue CE3 A 1102
3AC3SOFTWARETHR A:700 , PRO A:702 , PHE A:703 , TYR A:704 , GLN A:718 , ASP A:736 , PRO A:820 , ARG A:824 , SER A:850 , GLN A:852 , GLU A:853 , ARG A:1002 , ASN A:1017 , VAL A:1018 , GLY A:1019 , HOH A:1205 , HOH A:1236 , HOH A:1252 , HOH A:1275 , HOH A:1306binding site for residue CE3 A 1103

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:925 -A:949

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5NZY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NZY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NZY)

(-) Exons   (0, 0)

(no "Exon" information available for 5NZY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.ee....eee............eee....hhhhhh.........eeeehhhhhhhhhhh..hhh.eeee.....eee..eeeeeee.......eeeeee.....eeee......hhhhhhhhhhhh...eeee............hhhhhhhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhh...ee.hhhhhhhhhh....hhhh.ee.hhhhh.eeeee.hhhhhhhhhhhhhhhhhh..eeeeeee.................eee..eeeeee......hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5nzy A  700 TCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKHFTFPVYCSEITGNLLKNKLHVQEQYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADPSMERSLLADQKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEINSLITTDMCSSLVHLLPMMQINFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFTRIADVIPQTKGNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRSTMEKYFREWKLEAGY 1040
                                   709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NZY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NZY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NZY)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DCR1A_HUMAN | Q6PJP84b87 5ahr 5nzw 5nzx

(-) Related Entries Specified in the PDB File

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