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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  OPEN PROTOMER OF HUMAN ATM (ATAXIA TELANGIECTASIA MUTATED)
 
Authors :  D. Baretic, H. K. Pollard, D. I. Fisher, C. M. Johnson, B. Santhanam, C. M T. Kouba, A. R. Fersht, C. Phillips, R. L. Williams
Date :  13 Apr 17  (Deposition) - 17 May 17  (Release) - 31 May 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  5.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Fat, Mrn, Dna-Repair, Heat-Repeats, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Baretic, H. K. Pollard, D. I. Fisher, C. M. Johnson, B. Santhanam, C. M. Truman, T. Kouba, A. R. Fersht, C. Phillips, R. L. Williams
Structures Of Closed And Open Conformations Of Dimeric Huma Atm.
Sci Adv V. 3 00933 2017
PubMed-ID: 28508083  |  Reference-DOI: 10.1126/SCIADV.1700933

(-) Compounds

Molecule 1 - SERINE-PROTEIN KINASE ATM
    Cell LineHEK293
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Cell LineHEK293
    Expression System CommonHUMAN
    Expression System PlasmidPDEST12.2-ORIP
    Expression System Taxid9606
    Expression System Vector TypePLASMID
    GeneATM
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymATAXIA TELANGIECTASIA MUTATED,A-T MUTATED

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5NP1)

(-) Sites  (0, 0)

(no "Site" information available for 5NP1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5NP1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5NP1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NP1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NP1)

(-) Exons   (0, 0)

(no "Exon" information available for 5NP1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:2460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....hhhhhhhhhhh.....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhh...hhhhhhhhhhh..hhhhhhhh......hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhh....hhhhhhhhhhhh...hhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...........hhhhhhh..............hhhhhhhh......hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhh......hhhhhhh.....hhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhh..hhhhhhh........hhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhh.....hhhhh...........hhhhhhhh...hhhhhhh.hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhh.hhhhhh....hhhhhhhhhhhhh....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh........hhhhhh.................hhhhhhhhh...hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh..........hhhhhhhhhhh.....hhhhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.........hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..................hhhhh.....................................eeeeee.....eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........................hhhhhhhhh.......hhhhhhhhhhhh.h.hhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..........................hhhhhhh.........hhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5np1 A    3 LVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRDAVFRFLQKYIQKETECLRIAKKKMQEISSLVKYFIKCANRRAPRLKCQELLNYIMDTVKDSNILLKDILSVRKYWCEISQQQWLELFSVYFRLYLKPSQDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQCARQEKSSSGLNHILAALTIFLKTLAVNFRIRVCELGDEILPTLLYIWTQHRLNDSLKEVIIELFQLQIYSTKWRSILYNLYDLLVNEISHNIAVKENLIELMADICHQVFNPWLQIATQLISKLSPLLMILSQLLPQQRHGERTPYVLRCLTEVALCQDKRSNLESSQKSDLLKLWNKIWCITFRGISSEQIQAENFGLLGAIIQGSLVEVDREFWKLFTGSACRPAVCCLTLALTTSVKMGIEQNMCEVNRSFSLKESIMKWLLFYQLEGDLENFPHLVLEKILVSLTMKNCKAAMNFFQSVPECEHHQKDKEELSFSEVEELFLQTTFDKMDFLTFSVHQNLKESLDRCLLGLSEQLLNNYSSEITNSETLVRCSRLLVGVLGCYCYMGVIAEEEAYKSELFQKAKSLMQCAGESITASFIKKPFDRGEVESMEDDTNGNLMEVEDQSSMNLFNDYSQSTIGAINPLAEEYLAADIRRKLLMLIDSHLHMYLMLLKELPGEEYPLPMEDVLELLKPLSNVCSLYRRCKTILNHVLHVVKNLGQSNMDSENTRDAQGQFLTVIGAFKYIFSVRMALVNCLKTLLEADPYSKWAILNVMGKDFPVNEVFTQFLADNHHQVRMLAAESSRLLKALPLKLQQTAFENAYLKAQEGMREMSHSAENPETLDEIYNRKSVLLTLIAVVLSCSPICEKQALFALCVKKVLEKVSETFGMASHLDYLVLEWLFILLNYTNIEDFYRSCYKVLIPHLVIRSHFDEVKSIQEDWKSLLTDCFPKILVNILPYFAYEGTRDSGMAQQHLFISNLPEIVVELLMTLHEPANSSASQSTDLCDFSGDLDPAPNPPHFPSHVIKATFAYISNCHKTKLSKSPDSYQKILLAICEQAAETNNVYKKHRILKIYHLFVSLLLKDIKSGLGGAWAFVLRDVIYTLIHYINQRPSCIMDVSLRSFSLCCDLLSQVALENHLHVIVGTLIPLVYEQVEVQKQVLDLLKYLVIDNKDNENLYITIKLLDPFPDHVVFKDLRITQQKIKYSRGLEEINHFLSVSVYDALPLTRLEGLKDLRRQLELHKDQMVDIMRASQDNPQDGIMVKLVVNLLQLSKMAINHTGEKEVLEAVGSCLGEVGPIDFSTIAIQHSKDASYTKALKLFEDKELQWTFIMLTYLNNTLVEDCVKVRSAAVTCLKNILATKTGHSFWEIYKMTTDPMLAYLQPFRTSPLSENHDIWIKTLTCAFLDSGGTKCEILQLLKPMCEVKTDFCQTVLPYLIHDILLQDTNESWRNLLSTHVQGFFTSCLRHFSQTSRSTTPANLDSESEHFFRCCLDKKSQRTMLAVVDYMRRQKRPSSGTIFNDAFWLDLNYLEVAKVAQSCAAHFTALLYAEIYADKKSMDDQEKRSLAEETGISLQDLLLEIYRSIGEPDSLYGCGGCHILSVYLKGLDYELEELHYQAAWRNMQWDHCTSVSSYHESLYNALQSLRDSTFYESLKYARVKEVEEMCKRSLESVYSLYPTLSRLQAIGELESIGELFSRTHRQLSEVYIKWQKHSQLLKDSDFSFQEPIMALRTVILEILMEKEMDNSQRECIKDILTKHLVELSILARTFKNTQLPERAIFQIKQYNSVSCGVSEWQLEEAQVFWAKKEQSLALSILKQMIKKLDASCAPSLKLTYTECLRVCGNWLAETCLENPAVIMQTYLEKAVEVAGNSDELRNGKMKAFLSLARFSDTQYQRIENYMKSSEFENKELALRALKEDRKRFLCKAVENYINCLLSGEEHDMWVFRLCSLWLENSGVSEVNGMMKRDGMKIPTYKFLPLMYQLAARMGGGLGFHEVLNNLISRISMDHPHHTLFIILALANANRDEFDEDRTEAANRIICTIRSRRPQMVRSVEALCDAYIILANLDRKGINIPADQPITKLKNLEDVVVPTMEIKVDHTGEYGNLVTIQSFKAEFRLAGGVNLPKIIDCVGSDGKERRQLVKGRDDLRQDAVMQQVFQMCNTLLQRNTETRKRKLTICTYKVVPLSQRSGVLEWCTGTVPIGEFLVNNEDGAHKRYRPNDFSAFQCQKKMMFEEKYEVFMDVCQNFQPVFRYFCMEKFLDPAIWFEKRLAYTRSVATSSIVGYILGLGDRHVQNILINEQSAELVHIDLGVAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEKTMEVMRNSQETLLTIVEVLLYDPLFDWTMNPLKALYLIDQSFNKVAERVLMRLQEKLKGVEEGTVLSVGGQVNLLIQQAIDPKNLSRLFPGWKAWV 3056
                                    12        22        32        42  ||    64        74    ||  96       106       116       126   ||  147       157       167       177       187       197       207       217       227       237       247       257       267       277       287||     313       323 ||    345       355  ||   417    || 436       446       456       466       476       486       496       506       516       526      |539       549|      564       574       584      |605       615       625       635       645       655       680       690       700       710       720       730       740       750       760||     831       841       851       861|      884     ||923       933|      952       962       972       982|      996      1006      1016      1033      1043      1053      1063      1073      1083      1105      1115      1125      1135      1145      1155      1165      1175 ||   1197    ||1214      1237      1247      1257      1267   || 1281      1291      1301      1311|     1343      1353      1363      1373      1383      1393      1410      1420      1430      1440      1450      1460      1470      1480      1490      1500||    1520      1530      1540      1550      1560      1570      1580     |1594      1604      1614      1624      1634      1644      1654      1664      1674      1684      1694      1704      1714      1724      1734      1744      1754      1764     |1800      1810      1820      1830      1840      1850      1860      1870      1880      1890      1900      1910      1920      1930      1940      1950      1960      1970     |1998      2008      2018    ||2078      2095      2105      2115||    2131     |2144      2154      2164      2174      2184      2196      2206      2216      2226      2236      2246      2256      2266      2276      2286      2296      2306      2316      2329      2339      2349      2359      2369||    2384      2394      2404      2449      2459      2469      2479      2489      2499      2509      2519      2533      2543      2553      2563      2596      2606      2616      2626      2643      2653      2663      2673      2683      2693      2703      2713      2723      2733      2743      2753      2763      2773      2783      2793      2803  ||  2819      2829      2839      2849      2859      2869      2879      2889      2899      2909      2919      2929      2939      2949      2959      2969||    3006      3016      3026      3036      3046      3056
                                                                     45|                   79|                                   130|                                                                                                                                               288|                 325|                 358|        422|                                                                                                  533|         549|                                 591|                                                          664|                                                                              761|                                   861|            890|          933|                                    982|                                  1025|                                                      1091|                                                                     1177|        1202|        1222|                               1271|                               1311|                                                              1400|                                                                                         1501|                                                                      1586|                                                                                                                                                                               1770|                                                                                                                                                                               1976|                        2023|        2086|                  2116|          2137|                                              2191|                                                                                                                              2324|                                      2370|                                 2413|                                                                           2528|                                  2571|                                   2634|                                                                                                                                                                2806|                                                                                                                                                         2970|                                                          
                                                                      58                    92                                    142                                                                                                                                                305                  338                  411         432                                                                                                   537          555                                  603                                                           680                                                                               823                                    875             920           943                                     987                                   1033                                                       1104                                                                      1190         1210         1236                                1276                                1334                                                               1408                                                                                          1512                                                                       1591                                                                                                                                                                                1797                                                                                                                                                                                1995                         2074         2094                   2123           2141                                               2194                                                                                                                               2328                                       2376                                  2449                                                                            2533                                   2595                                    2642                                                                                                                                                                 2813                                                                                                                                                          2998                                                          

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NP1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NP1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NP1)

(-) Gene Ontology  (85, 85)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Cis Peptide Bonds" information available for 5np1)
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATM_HUMAN | Q133155np0

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