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(-) Description

Title :  HOMODIMERIZATION OF TIE2 FIBRONECTIN-LIKE DOMAINS 1-3 IN SPACE GROUP C2
 
Authors :  V. -M. Leppanen, P. Saharinen, K. Alitalo
Date :  26 Jan 17  (Deposition) - 26 Apr 17  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Receptor, Fibronectin-Like Domains, Dimerization, Homotypic Interactions, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. M. Leppanen, P. Saharinen, K. Alitalo
Structural Basis Of Tie2 Activation And Tie2/Tie1 Heterodimerization.
Proc. Natl. Acad. Sci. V. 114 4376 2017 U. S. A.
PubMed-ID: 28396439  |  Reference-DOI: 10.1073/PNAS.1616166114

(-) Compounds

Molecule 1 - ANGIOPOIETIN-1 RECEPTOR
    ChainsA, B
    EC Number2.7.10.1
    EngineeredYES
    Expression SystemSPODOPTERA AFF. FRUGIPERDA 2 RZ-2014
    Expression System Taxid1491790
    GeneTEK, TIE2, VMCM, VMCM1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsIN ADDITION TO THE TIE2 FN-LIKE DOMAINS, THE ENTITY INCLUDES MELLITIN SIGNAL PEPTIDE, A N-TERMINAL CLONING ARTEFACT (ADP), C-TERMINAL FACTOR XA CLEAVAGE SITE (IEGR) AND HIS-TAG. THE FIRST FN-LIKE DOMAIN IN CHAIN B WAS DISORDERED DUE TO LACK OF CRYSTAL PACKING CONTACTS AND WAS OMITTED FROM MODEL BUILDING.
    SynonymENDOTHELIAL TYROSINE KINASE,TUNICA INTERNA ENDOTHELIAL CELL KINASE,TYROSINE KINASE WITH IG AND EGF HOMOLOGY DOMAINS-2,TYROSINE- PROTEIN KINASE RECEPTOR TEK,TYROSINE-PROTEIN KINASE RECEPTOR TIE-2, HTIE2,P140 TEK

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric/Biological Unit (3, 13)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:464 , GLU A:500binding site for Poly-Saccharide residues NAG A 801 through NAG A 802 bound to ASN A 464
2AC2SOFTWARELYS A:554 , ASN A:560 , THR A:562 , SER A:599binding site for Poly-Saccharide residues NAG A 803 through MAN A 806 bound to ASN A 560
3AC3SOFTWAREASN A:596binding site for Mono-Saccharide NAG A 807 bound to ASN A 596
4AC4SOFTWAREASN A:649 , THR A:651 , SER A:654 , HOH A:901binding site for Mono-Saccharide NAG A 808 bound to ASN A 649
5AC5SOFTWAREASN B:560 , THR B:598 , SER B:599binding site for Poly-Saccharide residues NAG B 801 through BMA B 803 bound to ASN B 560
6AC6SOFTWAREASN B:596binding site for Mono-Saccharide NAG B 804 bound to ASN B 596
7AC7SOFTWAREASN B:649 , GLN B:698binding site for Mono-Saccharide NAG B 805 bound to ASN B 649

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MYA)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:468 -Pro A:469
2Arg A:522 -Gly A:523

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MYA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MYA)

(-) Exons   (0, 0)

(no "Exon" information available for 5MYA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:292
                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee....eeeee....eeee.....ee.......eeeeeee.......eeee....eeee.......eeeeeeee...........eeee............eeee.....eeee............eeeeeeee.....eeeeeee....eeee.......eeeeeeeee..........eeee..........eeeeeeeee..eeeeeee......eeeeeeeeee......eeeeeee......eeeee......eeeeeeeeee..........eeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mya A 441 DPVLPKPLNAPNVIDTGHNFAVINISSEPYFGDGPIKSKKLLYKPVNHYEAWQHIQVTNEIVTLNYLEPRTEYELCVQLVRRGEGHPGPVRRFTTASIGLPPPRGLNLLPKSQTTLNLTWQPIFPSSEDDFYVEVERRSVQKSDQQNIKVPGNLTSVLLNNLHPREQYVVRARVNTKAQGEWSEDLTAWTLSDILPPQPENIKISNITHSSAVISWTILDGYSISSITIRYKVQGKNEDQHVDVKIKNATITQYQLKGLEPETAYQVDIFAENNIGSSNPAFSHELVTLPES 735
                                   450       460       470       480       490       500       510       520   ||  533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733  
                                                                                                             524|                                                                                                                                                                                                               
                                                                                                              528                                                                                                                                                                                                               

Chain B from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee.....eeeeee.........eeeeeeee.....eeeeeee....eee........eeeeeeeee..........eeee..........eeeeee......eeeeee........eee..eee......eeeeeee......eeee.......eeee..eee...........eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mya B 540 SIGLPPPRGLNLLPKSQTTLNLTWQPIFPSSEDFYVEVERRSVQKSDQQNIKVPGNLTSVLLNNLHPREQYVVRARVNTKAQGEWSEDLTAWTLSDILPPQPENIKISNITHSSAVISWTILDGYSISSITIRYKVQGKNEDQHVDVKIKNATITQYQLKGLEPETAYQVDIFAENNIGSSNPAFSHELVT 731
                                   549       559       569 ||    580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730 
                                                         571|                                                                                                                                                              
                                                          573                                                                                                                                                              

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MYA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MYA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MYA)

(-) Gene Ontology  (74, 74)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:522 - Gly A:523   [ RasMol ]  
    Glu A:468 - Pro A:469   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TIE2_HUMAN | Q027631fvr 2gy5 2gy7 2oo8 2osc 2p4i 2wqb 3bea 3l8p 4k0v 4x3j 5myb 5utk

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5MYA)