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(-) Description

Title :  HUMAN NOTCH-2 EGF11-13
 
Authors :  R. J. Suckling, P. A. Handford, S. M. Lea
Date :  18 Jan 17  (Deposition) - 14 Jun 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A
Keywords :  Egf, Notch, Receptor, Signaling, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. J. Suckling, B. Korona, P. Whiteman, C. Chillakuri, L. Holt, P. A. Handford, S. M. Lea
Structural And Functional Dissection Of The Interplay Between Lipid And Notch Binding By Human Notch Ligands.
Embo J. 2017
PubMed-ID: 28572448  |  Reference-DOI: 10.15252/EMBJ.201796632

(-) Compounds

Molecule 1 - NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 2
    ChainsA
    EngineeredYES
    Expression SystemDROSOPHILA MELANOGASTER
    Expression System CellSCHNEIDER 2
    Expression System CommonFRUIT FLY
    Expression System PlasmidPEXS2-2
    Expression System Taxid7227
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 414-532
    GeneNOTCH2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHN2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1BGC2Ligand/IonBETA-D-GLUCOSE
2CA3Ligand/IonCALCIUM ION
3FUC1Ligand/IonALPHA-L-FUCOSE
4XYP1Ligand/IonBETA-D-XYLOPYRANOSE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:494 , ILE A:495 , GLU A:497 , ASP A:511 , LYS A:512 , HOH A:726binding site for residue CA A 605
2AC2SOFTWAREASP A:415 , VAL A:416 , GLU A:418 , ASN A:435 , THR A:436 , ALA A:439 , HOH A:703binding site for residue CA A 606
3AC3SOFTWAREASP A:456 , ILE A:457 , GLU A:459 , ASP A:473 , LYS A:474 , HOH A:720 , HOH A:725binding site for residue CA A 607
4AC4SOFTWARELYS A:446 , GLU A:459 , SER A:462 , GLY A:476 , GLY A:477 , PHE A:478 , HIS A:490 , PRO A:527 , GLN A:530 , HOH A:750binding site for Poly-Saccharide residues BGC A 601 through XYP A 602 bound to SER A 462
5AC5SOFTWAREMET A:421 , THR A:470 , LEU A:481 , CYS A:482 , HOH A:777binding site for Mono-Saccharide FUC A 603 bound to THR A 470
6AC6SOFTWAREGLU A:497 , SER A:500 , PHE A:516 , HOH A:714 , HOH A:723 , HOH A:732 , HOH A:734binding site for Mono-Saccharide BGC A 604 bound to SER A 500

(-) SS Bonds  (9, 9)

Asymmetric/Biological Unit
No.Residues
1A:419 -A:433
2A:427 -A:442
3A:444 -A:453
4A:460 -A:471
5A:465 -A:480
6A:482 -A:491
7A:498 -A:509
8A:503 -A:518
9A:520 -A:529

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MWB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MWB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MWB)

(-) Exons   (0, 0)

(no "Exon" information available for 5MWB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:118
                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeee..eeeee....ee.....ee.hhhhhh......eeeee..eeeee....ee.....ee.hhhhhh......eeeee..eeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 5mwb A 415 DVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQID 532
                                   424       434       444       454       464       474       484       494       504       514       524        

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MWB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MWB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MWB)

(-) Gene Ontology  (41, 41)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NOTC2_HUMAN | Q047212oo4

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