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(-) Description

Title :  HUMAN JAGGED2 C2-EGF2
 
Authors :  R. J. Suckling, P. A. Handford, S. M. Lea
Date :  18 Jan 17  (Deposition) - 14 Jun 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  C2, Egf, Notch, Signaling, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. J. Suckling, B. Korona, P. Whiteman, C. Chillakuri, L. Holt, P. A. Handford, S. M. Lea
Structural And Functional Dissection Of The Interplay Between Lipid And Notch Binding By Human Notch Ligands.
Embo J. 2017
PubMed-ID: 28572448  |  Reference-DOI: 10.15252/EMBJ.201796632

(-) Compounds

Molecule 1 - PROTEIN JAGGED-2
    ChainsA
    EngineeredYES
    Expression SystemDROSOPHILA MELANOGASTER
    Expression System CellSCHNEIDER 2
    Expression System CommonFRUIT FLY
    Expression System PlasmidPEXS2-2
    Expression System Taxid7227
    Expression System Vector TypePLASMID
    GeneJAG2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHJ2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:51 , ASP A:65 , GLU A:66 , ASP A:68 , HOH A:524binding site for residue CA A 402
2AC2SOFTWAREASP A:51 , ASP A:68 , ASP A:150 , TRP A:151 , ASP A:152 , CA A:404binding site for residue CA A 403
3AC3SOFTWARECYS A:50 , ASP A:51 , ASP A:150 , ASP A:152 , LEU A:161 , CA A:403binding site for residue CA A 404
4AC4SOFTWAREASN A:153 , MET A:232binding site for Mono-Saccharide NAG A 401 bound to ASN A 153

(-) SS Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1A:49 -A:62
2A:50 -A:67
3A:74 -A:88
4A:198 -A:207
5A:211 -A:223
6A:231 -A:240
7A:245 -A:256
8A:249 -A:262
9A:264 -A:273
10A:276 -A:287
11A:282 -A:293
12A:295 -A:304

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:105 -Pro A:106

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MW5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MW5)

(-) Exons   (0, 0)

(no "Exon" information available for 5MW5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeee......................eeeeeeee..............eeee.......eee.......eeeeee......eeeeeeeeee.......hhh.eeeeeeeeee.......eeeeee....eeeeeeeeee...ee.....ee...eee..eeeee.....eee...ee.....ee..........ee.......ee...ee.....ee........ee.......ee...ee.....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5mw5 A  27 MGYFELQLSALRNVNGELLSGACCDGGCGHDECDTYVRVCLKEYQAKVTPTGPCSYGHGATPVLGGNSFYLPDQDPGLVVIPFQFAWPRSFTLIVEAWDWDNDTTPNEELLIERVSHAGMINPEDRWKSLHFSGHVAHLELQIRVRCDENYYSATCNKFCRPRNDFFGHYTCDQYGNKACMDGWMGKECKEAVCKQGCNLLHGGCTVPGECRCSYGWQGRFCDECVPYPGCVHGSCVEPWQCNCETNWGGLLCDKDLN 309
                                    36        46    ||  64        74        84        94       104 ||    131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301        
                                                   51|                                           106|                                                                                                                                                                                         
                                                    60                                            124                                                                                                                                                                                         

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MW5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MW5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MW5)

(-) Gene Ontology  (29, 29)

Asymmetric/Biological Unit(hide GO term definitions)

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    Leu A:105 - Pro A:106   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAG2_HUMAN | Q9Y2195mw7 5mwf

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5MW5)