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(-) Description

Title :  GLYCOSIDE HYDROLASE BT3686 BOUND TO GLUCURONIC ACID
 
Authors :  J. Munoz-Munoz, A. Cartmell, N. Terrapon, B. Henrissat, H. J. Gilbert
Date :  13 Jan 17  (Deposition) - 26 Apr 17  (Release) - 17 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.39
Chains :  Asym./Biol. Unit :  A
Keywords :  Rhamnosidase, Bacteroides, Beta-Propeller, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Munoz-Munoz, A. Cartmell, N. Terrapon, B. Henrissat, H. J. Gilbert
Unusual Active Site Location And Catalytic Apparatus In A Glycoside Hydrolase Family.
Proc. Natl. Acad. Sci. V. 114 4936 2017 U. S. A.
PubMed-ID: 28396425  |  Reference-DOI: 10.1073/PNAS.1701130114

(-) Compounds

Molecule 1 - NEURAMINIDASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BT_3686
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON (STRAIN ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
    Organism Taxid: 226186

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1BDP1Ligand/IonBETA-D-GLUCOPYRANURONIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:149 , THR A:150 , ASP A:151 , GLY A:152 , VAL A:202 , ASP A:203 , GLY A:206 , GLU A:389 , LYS A:392 , LYS A:393 , HOH A:620 , HOH A:658 , HOH A:690 , HOH A:743 , HOH A:795 , HOH A:820binding site for residue BDP A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MUL)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:248 -Pro A:249

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MUL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MUL)

(-) Exons   (0, 0)

(no "Exon" information available for 5MUL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeee..eeee..eeeeeee....eeeeeeee......eeeeeeee....eeeeee.....eeeeee.......eee......................eeeeeeee.hhh.eeeeeee......eeeeeeee....eeeeee..........eeeeeeee.....eeeeeeee...hhh.eeeeeeeee........................eeee............eeee.....eeeeeee........eeeeeee....eeeee..................eeeee..eeeeee.hhhhh...eeeee........eeee.............hhhhhhhhh.eeeeee....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5mul A  19 LRQQKLVEVAKGYSLVTHGDEQYISYYDADGYLVLGKRKLNSKQWTLHRTQYRGAHNIISIMVDGEGYLHVSFDHHGHKLNYCRSIAPGSLELGDKMPMTGVDEGNVTYPEFYPLTDGDLLFVYRSGSSGRGNLVMNRYSLKDHKWARVQDVLIDGEDKRNAYWQLYVDEKGTIHLSWVWRETWQVETNHDLCYARSFDNGVTWYKSDGEQYKLPITASNAEYACRIPQNSELINQTSMSADAGGNPYIATYWRSSDSEVPQYRIVWNDGKTWHNRQVTDRKTPFTLKMIPVARPRIVVEDGEIFYIFRDEERGSRVSMAHTADVANGKWIVTDLTDFSVDAWEPSHDTELWKKQRKLNLFVQHTCPQMIYVLEANTN 428
                                    28  ||    50        60        70        80   ||   94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       329       339       349       359       369       379       389       399     ||420        
                                       31|                                      84|                                                                                                                                                                                                                                      322|                                                                          405|           
                                        44                                       89                                                                                                                                                                                                                                       328                                                                           417
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MUL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MUL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MUL)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5MUL)

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    Leu A:248 - Pro A:249   [ RasMol ]  
 

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        Q8A1H5_BACTN | Q8A1H5: 5muk

(-) Related Entries Specified in the PDB File

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