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(-) Description

Title :  STRUCTURE OF DNA AGCGA-QUADRUPLEX ADOPTED BY 15-MER D(GCGAGGGAGCGAGGG), VK34, OLIGONUCLEOTIDE FOUND IN REGULATORY REGION OF THE PLEKHG3 HUMAN GENE
 
Authors :  V. Kocman, J. Plavec
Date :  09 Oct 16  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
NMR Structure *:  A,B  (1x)
Keywords :  Agcga-Quadruplex, Agcga-Quadruplex Family, Gaga-Quartet, G-G N1- Carbonyl Symmetric Base Pair, Plekhg3 Gene, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. Kocman, J. Plavec
Tetrahelical Structural Family Adopted By Agcga-Rich Regulatory Dna Regions.
Nat Commun V. 8 15355 2017
PubMed-ID: 28513602  |  Reference-DOI: 10.1038/NCOMMS15355

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)- 3')
    ChainsA, B
    EngineeredYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
NMR Structure (10x)AB
NMR Structure * (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5M1L)

(-) Sites  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:15
                                              
                  5m1l A  1 GCGAGGGAGCGAGGG 15
                                    10     

Chain B from PDB  Type:DNA  Length:15
                                              
                  5m1l B  1 GCGAGGGAGCGAGGG 15
                                    10     

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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NMR Structure(hide GO term definitions)
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