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(-) Description

Title :  STRUCTURE OF THE DOMAIN OF UNKNOWN FUNCTION DUF1669 FROM HUMAN FAM83B
 
Authors :  D. M. Pinkas, J. C. Bufton, E. P. Williams, L. Shrestha, N. A. Burgess-Br Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bullock, Struct Genomics Consortium (Sgc)
Date :  29 Sep 16  (Deposition) - 26 Oct 16  (Release) - 26 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.58
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Domain Of Unknown Function, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. M. Pinkas, J. C. Bufton, E. P. Williams, L. Shrestha, N. A. Burgess-Brown, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bullock
Structure Of The Domain Of Unknown Function Duf1669 From Human Fam83B
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN FAM83B
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System Taxid469008
    Expression System VariantROSETTA
    FragmentUNP RESIDUES 117-294
    GeneFAM83B, C6ORF143
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric/Biological Unit (2, 11)
No.NameCountTypeFull Name
1EDO7Ligand/Ion1,2-ETHANEDIOL
2IOD4Ligand/IonIODIDE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:249 , HIS A:254binding site for residue IOD A 302
2AC2SOFTWAREVAL A:282binding site for residue IOD A 304
3AC3SOFTWAREARG A:206 , VAL A:207 , HOH A:410binding site for residue EDO A 305
4AC4SOFTWAREGLN A:229 , GLU A:272 , PHE B:125 , ARG B:129 , SER B:256 , HOH B:430binding site for residue EDO A 306
5AC5SOFTWAREMET A:240 , GLY A:242 , TYR A:244 , TYR A:246 , VAL A:258binding site for residue EDO A 307
6AC6SOFTWAREILE A:121 , GLY B:118 , THR B:119 , GLN B:264binding site for residue EDO A 308
7AC7SOFTWAREARG B:206 , VAL B:207 , HOH B:421 , HOH B:448binding site for residue EDO B 301
8AC8SOFTWAREPHE A:125 , ARG A:129 , SER A:256 , HOH A:447 , GLN B:229 , GLU B:272binding site for residue EDO B 302
9AC9SOFTWAREVAL B:149 , LEU B:233 , CYS B:236 , ASP B:270 , HOH B:455binding site for residue EDO B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LZK)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1His A:126 -Pro A:127
2His B:126 -Pro B:127

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LZK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LZK)

(-) Exons   (0, 0)

(no "Exon" information available for 5LZK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.......hhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhh..hhhhh..eeeeee...eee.....eee......eeee...eeeee.....hhhhhh..eeeeeee.hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lzk A 118 GTHIDLLFHPPRAHLLTIKETIRKMIKEARKVIALVMDIFTDVDIFKEIVEASTRGVSVYILLDESNFNHFLNMTEKQGCSVQRLRNIRVRTVKGQDYLSKTGAKFHGKMEQKFLLVDCQKVMYGSYSYMWSFEKAHLSMVQIITGQLVESFDEEFRTLYARSCVPSSF 286
                                   127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277         

Chain B from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.......hhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhh..hhhhh..eeeeee...eee.....eee......eeee...eeeee....hhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lzk B 118 GTHIDLLFHPPRAHLLTIKETIRKMIKEARKVIALVMDIFTDVDIFKEIVEASTRGVSVYILLDESNFNHFLNMTEKQGCSVQRLRNIRVRTVKGQDYLSKTGAKFHGKMEQKFLLVDCQKVMYGSYSYMWSFEKAHLSMVQIITGQLVESFDEEFRTLYARSCVPSSF 286
                                   127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277         

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LZK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LZK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LZK)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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