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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN ACBD3 GOLD DOMAIN IN COMPLEX WITH 3A PROTEIN OF AICHIVIRUS B
 
Authors :  M. Klima, E. Boura
Date :  29 Sep 16  (Deposition) - 14 Dec 16  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Acbd3, Gold, 3A, Aichivirus, Antiviral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Klima, E. Boura
Crystal Structure Of Human Acbd3 Gold Domain In Complex Wit 3A Protein Of Aichivirus B
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GOLGI RESIDENT PROTEIN GCP60
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Gene: ACBD3, GCP60, GOCAP1, GOLPH1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 3,GOLGI COMPLEX- ASSOCIATED PROTEIN 1,GOCAP1,GOLGI PHOSPHOPROTEIN 1,GOLPH1,PBR- AND PKA-ASSOCIATED PROTEIN 7,PERIPHERAL BENZODIAZEPINE RECEPTOR- ASSOCIATED PROTEIN PAP7
 
Molecule 2 - 3A
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Organism Scientific: AICHIVIRUS B
    Organism Taxid: 194965

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1BGC1Ligand/IonBETA-D-GLUCOSE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:426 , LEU A:476 , GLU A:478 , ARG A:484 , TYR A:512 , SER A:513 , LYS A:518binding site for residue BGC A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LZ6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LZ6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5LZ6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeee.hhhhhhhhhh.....eeee....eeeeeee......eeeeeeee....eeeeeeeee...eeeeeeeeee.....eeeeeee....eeeeeeee........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5lz6 A 366 LPVIAAPSMWTRPQIKDFKEKIQQDADSVITVGRGEVVTVRVPTHEEGSYLFWEFATDNYDIGFGVYFEWTPLLDEIVPVYRRDCHEEVYAGSHQYPGRGVYLLKFDNSYSLWRSKSVYYRVYYTR 528
                                   375       385       395       405       415       425       435||     482       492       502       512       522      
                                                                                                436|                                                      
                                                                                                 474                                                      


Chain B from PDB  Type:PROTEIN  Length:31
                                                               
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .eeeee...ee.hhhhhhhhhh..ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                 5lz6 B   4 SERTFETAPSEIDADEVLEILSKSKPAPTHL  34
                                    13        23        33
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LZ6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LZ6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LZ6)

(-) Gene Ontology  (43, 46)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GCP60_HUMAN | Q9H3P7: 2n72 2n73 5lz1 5lz3 5tdq

(-) Related Entries Specified in the PDB File

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