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(-) Description

Title :  HUMAN OGT IN COMPLEX WITH UDP AND FUSED SUBSTRATE PEPTIDE (TAB1)
 
Authors :  O. Raimi
Date :  14 Sep 16  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.54
Chains :  Asym./Biol. Unit :  A
Keywords :  Glycosylation, Signalling, O-Glcnac, O-Glcnac Transferase, Substrate Recognition, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Rafie, O. Raimi, A. T. Ferenbach, V. S. Borodkin, V. Kapuria, D. M. F. Van Aalten
Recognition Of A Glycosylation Substrate By The O-Glcnac Transferase Tpr Repeats.
Open Biol V. 7 2017
PubMed-ID: 28659383  |  Reference-DOI: 10.1098/RSOB.170078

(-) Compounds

Molecule 1 - UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N- ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT,UDP-N- ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT
    ChainsA
    EC Number2.4.1.255, 2.4.1.255
    EngineeredYES
    Expression SystemESCHERICHIA COLI K-12
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantPLYSIS
    Expression System Vector TypePLASMID
    GeneOGT
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymO-GLCNAC TRANSFERASE SUBUNIT P110,O-LINKED N- ACETYLGLUCOSAMINE TRANSFERASE 110 KDA SUBUNIT,OGT,O-GLCNAC TRANSFERASE SUBUNIT P110,O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE 110 KDA SUBUNIT,OGT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
2UDP1Ligand/IonURIDINE-5'-DIPHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:295 , TYR A:296 , SER A:297 , PRO A:559 , GLN A:839 , LYS A:842 , VAL A:895 , ALA A:896 , LYS A:898 , HIS A:901 , ARG A:904 , HIS A:920 , THR A:921 , THR A:922 , ASP A:925 , NAG A:1202 , HOH A:1310 , HOH A:1313binding site for residue UDP A 1201
2AC2SOFTWARETYR A:296 , SER A:298 , ALA A:299 , LYS A:430 , ASP A:431 , GLN A:839 , HOH A:1324binding site for residue NAG A 1203
3AC3SOFTWARESER A:301 , LYS A:396 , GLU A:397 , GLN A:399 , ASP A:431binding site for residue NAG A 1204
4AC4SOFTWARESER A:297 , HIS A:498 , THR A:560 , LEU A:563 , LEU A:653 , GLY A:654 , PRO A:656 , PHE A:694 , TYR A:841 , HIS A:920 , UDP A:1201 , HOH A:1304binding site for Mono-Saccharide NAG A 1202 bound to SER A 297

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LVV)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Lys A:714 -Ser A:715
2Phe A:868 -Pro A:869
3Gly A:884 -Leu A:885

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LVV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LVV)

(-) Exons   (0, 0)

(no "Exon" information available for 5LVV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:720
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh......hhhhhh....hhhhhhhhhhhhhhhhhhhhhh..................eeeeeee.....hhhhhhhhhhhhhh....eeeeeee......hhhhhhhhhhh.eeee.hhh.hhhhhhhhhhhh...eeee.........hhhhhh....eeee..............eeeee....hhhhhhhh..eeeee.......hhhhhhhhhh..eee............eeee..hhhhhhhh....eee..eeee..hhhhhhhhhhhhhh..eeee..eeeee..hhhhhhhhhhh.......eeeee.hhhh......eee...hhhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhh.hhh.eeeee..hhhhhhhhhhhh.eee.......hhhhhhhhhh...ee.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5lvv A  292 HHVPYSSAQSTSKTSVTLSLGGGTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHMIK 1028
                                   301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741   ||  768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918       928       938       948       958       968       978       988       998      1008      1018      1028
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               745|                                                                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                763                                                                                                                                                                                                                                                                         

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LVV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LVV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LVV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5LVV)

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  Cis Peptide Bonds
    Gly A:884 - Leu A:885   [ RasMol ]  
    Lys A:714 - Ser A:715   [ RasMol ]  
    Phe A:868 - Pro A:869   [ RasMol ]  
 

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  2.4.1.255
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OGT1_HUMAN | O152941w3b 3pe3 3pe4 3tax 4ay5 4ay6 4cdr 4gyw 4gyy 4gz3 4gz5 4gz6 4n39 4n3a 4n3b 4n3c 4xi9 4xif 5bnw 5c1d 5hgv 5lwv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LVV)