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(-) Description

Title :  HUMAN LYSOZYME IN COMPLEX WITH A TETRASACCHARIDE FRAGMENT OF THE O-CHAIN OF LPS FROM KLEBSIELLA PNEUMONIAE
 
Authors :  R. Zhang, N. E. Nifantiev, V. Krylov, T. Luetteke, A. J. Scheidig, H. -C.
Date :  26 Aug 16  (Deposition) - 21 Jun 17  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.06
Chains :  Asym./Biol. Unit :  A
Keywords :  Lectin, Complex, Lps, O-Chain, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, L. Wu, T. Eckert, M. Burg-Roderfeld, M. A. Rojas-Macias, T. Lutteke, V. B. Krylov, D. A. Argunov, A. Datta, P. Markart, A. Guenther, B. Norden, R. Schauer, A. Bhunia, M. A. Enani, M. Billeter A. J. Scheidig, N. E. Nifantiev, H. -C. Siebert
Lysozymes Lectin-Like Characteristics Facilitates Its Immun Defense Function
Q. Rev. Biophys. 2017
PubMed: search  |  Reference-DOI: 10.1017/S0033583517000075

(-) Compounds

Molecule 1 - LYSOZYME C
    Chains: A
    EC Number: 3.2.1.17
    Engineered: YES
    Expression System: MUS MUSCULUS
    Expression System Taxid: 10090
    Gene: LYZ, LZM
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 1,4-BETA-N-ACETYLMURAMIDASE C

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2KTS1Ligand/Ion(2~{R},3~{R},4~{S},5~{R},6~{R})-2-[(2~{S},3~{R},4~{R},5~{R})-2-[(1~{R})-1,2-BIS(OXIDANYL)ETHYL]-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{S},3~{R},4~{R},5~{R})-2-[(1~{R})-1,2-BIS(OXIDANYL)ETHYL]-4-OXIDANYL-5-PROPOXY-OXOLAN-3-YL]OXY-6-(HYDROXYMETHYL)-3,5-BIS(OXIDANYL)OXAN-4-YL]OXY-4-OXIDANYL-OXOLAN-3-YL]OXY-6-(HYDROXYMETHYL)OXANE-3,4,5-TRIOL
3NA1Ligand/IonSODIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:80 , ARG A:107binding site for residue CL A 201
2AC2SOFTWAREASN A:27 , ASN A:66 , SER A:80binding site for residue CL A 202
3AC3SOFTWAREASP A:87 , ASN A:88 , HOH A:337 , HOH A:450 , HOH A:454binding site for residue CL A 203
4AC4SOFTWARETHR A:11 , ARG A:14 , LEU A:15 , GLY A:127 , HOH A:448binding site for residue NA A 204
5AC5SOFTWARETRP A:34 , GLY A:48 , GLN A:58 , ILE A:59 , ASN A:60 , ARG A:62 , TYR A:63 , TRP A:64 , VAL A:74 , ALA A:76 , ARG A:98 , VAL A:99 , ASP A:102 , GLN A:104 , ALA A:108 , TRP A:109 , ARG A:115 , HOH A:307 , HOH A:309 , HOH A:312 , HOH A:313 , HOH A:316 , HOH A:317 , HOH A:318 , HOH A:327 , HOH A:340 , HOH A:342 , HOH A:357 , HOH A:366 , HOH A:372 , HOH A:397 , HOH A:412binding site for residue KTS A 205

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:6 -A:128
2A:30 -A:116
3A:65 -A:81
4A:77 -A:95

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LSH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LSH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LSH)

(-) Exons   (0, 0)

(no "Exon" information available for 5LSH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.....eee......eee....ee...................hhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lsh A   1 KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LSH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LSH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LSH)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  5lsh
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  LYSC_HUMAN | P61626
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  3.2.1.17
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LYSC_HUMAN | P61626: 133l 134l 1b5u 1b5v 1b5w 1b5x 1b5y 1b5z 1b7l 1b7m 1b7n 1b7o 1b7p 1b7q 1b7r 1b7s 1bb3 1bb4 1bb5 1c43 1c45 1c46 1c7p 1cj6 1cj7 1cj8 1cj9 1ckc 1ckd 1ckf 1ckg 1ckh 1d6p 1d6q 1di3 1di4 1di5 1eq4 1eq5 1eqe 1gay 1gaz 1gb0 1gb2 1gb3 1gb5 1gb6 1gb7 1gb8 1gb9 1gbo 1gbw 1gbx 1gby 1gbz 1gdw 1gdx 1ge0 1ge1 1ge2 1ge3 1ge4 1gev 1gez 1gf0 1gf3 1gf4 1gf5 1gf6 1gf7 1gf8 1gf9 1gfa 1gfe 1gfg 1gfh 1gfj 1gfk 1gfr 1gft 1gfu 1gfv 1hnl 1i1z 1i20 1i22 1inu 1ioc 1ip1 1ip2 1ip3 1ip4 1ip5 1ip6 1ip7 1iwt 1iwu 1iwv 1iww 1iwx 1iwy 1iwz 1ix0 1iy3 1iy4 1jka 1jkb 1jkc 1jkd 1jsf 1jwr 1laa 1lhh 1lhi 1lhj 1lhk 1lhl 1lhm 1lmt 1loz 1lyy 1lz1 1lz4 1lz5 1lz6 1lzr 1lzs 1op9 1oua 1oub 1ouc 1oud 1oue 1ouf 1oug 1ouh 1oui 1ouj 1qsw 1re2 1rem 1rex 1rey 1rez 1tay 1tby 1tcy 1tdy 1ubz 1w08 1wqm 1wqn 1wqo 1wqp 1wqq 1wqr 1yam 1yan 1yao 1yap 1yaq 207l 208l 2bqa 2bqb 2bqc 2bqd 2bqe 2bqf 2bqg 2bqh 2bqi 2bqj 2bqk 2bql 2bqm 2bqn 2bqo 2hea 2heb 2hec 2hed 2hee 2hef 2lhm 2mea 2meb 2mec 2med 2mee 2mef 2meg 2meh 2mei 2nwd 2zij 2zik 2zil 2zwb 3eba 3fe0 3lhm 3ln2 4i0c 4ml7 4r0p 5lvk

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LSH)