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(-) Description

Title :  STRUCTURE OF THE TOG DOMAIN OF HUMAN CEP104
 
Authors :  M. Van Breugel
Date :  13 Aug 16  (Deposition) - 11 Jan 17  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Tog Domain, Heat Repeat, Tubulin Binding, Cep104, Basal Body, Centriole, Cilia, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Al-Jassar, A. Andreeva, D. D. Barnabas, S. H. Mclaughlin, C. M. Johnson, M. Yu, M. Van Breugel
The Ciliopathy-Associated Cep104 Protein Interacts With Tubulin And Nek1 Kinase.
Structure V. 25 146 2017
PubMed-ID: 28017521  |  Reference-DOI: 10.1016/J.STR.2016.11.014

(-) Compounds

Molecule 1 - CENTROSOMAL PROTEIN OF 104 KDA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA
    Fragment: TOG DOMAIN, UNP RESIDUES 392-676
    Gene: CEP104, KIAA0562
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CEP104

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5LPH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LPH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LPH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LPH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LPH)

(-) Exons   (0, 0)

(no "Exon" information available for 5LPH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.......hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lph A 414 LGEPEPLTEKALREASSAIDVLGETLVAEAYCKTWSYREDALLALSKKLmEmPVGTPKEDLKNTLRASVFLVRRAIKDIVTSVFQASLKLLKmIITQYIPKHKLSKLETAHCVERTIPVLLTRTGDSSARLRVTAANFIQEmALFKEVKSLQIIPSYLVQPLKANSSVHLAmSQmGLLARLLKDLGTGSSGFTIDNVmKFSVSALEHRVYEVRETAVRIILDmYRQHQASILEYLPPDDSNTRRNILYKTIFEGFAKIDG 673
                                   423       433       443       453       463 |     473       483       493       503  |    513       523       533       543       553 |     563       573       583 |  |  593       603       613       623       633  |    643       653       663       673
                                                                           463-MSE                                    506-MSE                                          555-MSE                       585-MSE                   611-MSE                  636-MSE                                 
                                                                             465-MSE                                                                                                                    588-MSE                                                                                 


Chain B from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.......hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lph B 415 GEPEPLTEKALREASSAIDVLGETLVAEAYCKTWSYREDALLALSKKLmEmPVGTPKEDLKNTLRASVFLVRRAIKDIVTSVFQASLKLLKmIITQYIPKHKLSKLETAHCVERTIPVLLTRTGDSSARLRVTAANFIQEmALFKEVKSLQIIPSYLVQPLKANSSVHLAmSQmGLLARLLKDLGTGSSGFTIDNVmKFSVSALEHRVYEVRETAVRIILDmYRQHQASILEYLPPDDSNTRRNILYKTIFEGFAKIDGRA 675
                                   424       434       444       454       464|      474       484       494       504 |     514       524       534       544       554|      564       574       584|  |   594       604      |614       624       634 |     644       654       664       674 
                                                                          463-MSE                                    506-MSE                                          555-MSE                       585-MSE                   611-MSE                  636-MSE                                   
                                                                            465-MSE                                                                                                                    588-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LPH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LPH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LPH)

(-) Gene Ontology  (8, 8)

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        CE104_HUMAN | O60308: 5lpi

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