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(-) Description

Title :  STRUCTURE OF THE THERMOSTABILIZED EAAT1 CRYST MUTANT IN COMPLEX WITH L-ASP AND THE ALLOSTERIC INHIBITOR UCPH101
 
Authors :  J. Canul-Tec, R. Assal, P. Legrand, N. Reyes
Date :  27 Jul 16  (Deposition) - 19 Apr 17  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Excitatory Amino Acid Transporter 1, Human Glutamate Transporter, Slc1A3, Ucph101, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. C. Canul-Tec, R. Assal, E. Cirri, P. Legrand, S. Brier, J. Chamot-Rooke, N. Reyes
Structure And Allosteric Inhibition Of Excitatory Amino Aci Transporter 1.
Nature V. 544 446 2017
PubMed-ID: 28424515  |  Reference-DOI: 10.1038/NATURE22064

(-) Compounds

Molecule 1 - EXCITATORY AMINO ACID TRANSPORTER 1,NEUTRAL AMINO ACID TRANSPORTER B(0),EXCITATORY AMINO ACID TRANSPORTER 1
    ChainsA
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Atcc NumberCRL-1573.3
    Expression System CellEMBRYONIC
    Expression System Cell LineHEK-293.2SUS
    Expression System CommonHUMAN
    Expression System PlasmidPCDNA3
    Expression System Taxid9606
    Expression System TissueEMBRYONIC KIDNEY
    Expression System Vector TypeMAMMALIAN EXPRESION
    GeneSLC1A3, EAAT1, GLAST, GLAST1, SLC1A5, ASCT2, M7V1, RDR, RDRC
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSODIUM-DEPENDENT GLUTAMATE/ASPARTATE TRANSPORTER 1,GLAST-1, SOLUTE CARRIER FAMILY 1 MEMBER 3,ATB(0),BABOON M7 VIRUS RECEPTOR, RD114/SIMIAN TYPE D RETROVIRUS RECEPTOR,SODIUM-DEPENDENT NEUTRAL AMINO ACID TRANSPORTER TYPE 2,SOLUTE CARRIER FAMILY 1 MEMBER 5, SODIUM-DEPENDENT GLUTAMATE/ASPARTATE TRANSPORTER 1,GLAST-1,SOLUTE CARRIER FAMILY 1 MEMBER 3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
16Z61Ligand/Ion2-AMINO-5,6,7,8-TETRAHYDRO-4-(4-METHOXYPHENYL)-7-(NAPHTHALEN-1-YL)-5-OXO-4H-CHROMENE-3-CARBONITRILE
2ASP1Mod. Amino AcidASPARTIC ACID
3NA1Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:376 , MET A:379 , SER A:417 , ILE A:418 , ALA A:420binding site for residue NA A 601
2AC2SOFTWARESER A:343 , SER A:344 , SER A:345 , THR A:382 , GLY A:422 , ILE A:423 , ALA A:426 , GLY A:427 , ASP A:456 , ARG A:459 , THR A:460 , ASN A:463binding site for residue ASP A 602
3AC3SOFTWARELEU A:104 , SER A:116 , GLY A:120 , ALA A:123 , VAL A:124 , TYR A:127 , MET A:231 , PHE A:235 , PHE A:369 , VAL A:373binding site for residue 6Z6 A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LLM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LLM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LLM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LLM)

(-) Exons   (0, 0)

(no "Exon" information available for 5LLM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:400
                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhh.eee.......eee..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5llm A  37 TKEDVKSFLRRNALLLLTVLAVILGVVLGFLLRPYPLSPREVKYFAFPGELLMRMLKMLILPLIVSSLITGLASLDAKASGRLGMRAVVYYMSTTIIAVVLGIILVLIIHPEVLDCFLDLARNIFPSNLVSAAFRSYSTTPVGQEVEGMNILGLVVFSMVFGFALGKMGEQGQLLVDFFNSLNEATMKLVAIIMWYAPLGILFLIAGKIVEGGQLGMYMVTVIVGLVIHGLIVLPLIYFLITRKNPFVFIAGILQALITALGTSSSSATLPITFKCLEENNGVDKRITRFVLPVGATINMDGTALYEAVAAIFIAQQIITISITATAASIGAAGIPQAGLVTMVIVLTAVGLPTDDITLIIAVDWLLDRFRTMVNVLGDALGAGIVEHLSRKELEKQDAD 602
                                    46        56        66        76        86        96       106       116       126       136       146||     179       189       199|      222       232       242       252       262       272       282||     299       309       319       329       339       349       359       369       379       389     ||408       418       428       438       448       458       468       478       602
                                                                                                                                        147|                         199|                                                                   283|                                                                                                     395|                                                                               487|
                                                                                                                                         171                          213                                                                    291                                                                                                      405                                                                                602

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LLM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LLM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LLM)

(-) Gene Ontology  (59, 67)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AAAT_HUMAN | Q157585llu 5lm4 5mju
        EAA1_HUMAN | P430035llu 5lm4 5mju

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LLM)