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(-) Description

Title :  STRUCTURE OF A PAR3-INHIBITORY PEPTIDE BOUND TO PKCIOTA CORE KINASE DOMAIN
 
Authors :  E. V. Soriano, A. G. Purkiss, N. Q. Mcdonald
Date :  13 Jul 16  (Deposition) - 14 Sep 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apkc, Polarity, Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. V. Soriano, M. E. Ivanova, G. Fletcher, P. Riou, P. P. Knowles, K. Barnouin, A. Purkiss, B. Kostelecky, P. Saiu, M. Linch, A. Elbediwy S. Kjr, N. O'Reilly, A. P. Snijders, P. J. Parker, B. J. Thompson, N. Q. Mcdonald
Apkc Inhibition By Par3 Cr3 Flanking Regions Controls Substrate Access And Underpins Apical-Junctional Polarization.
Dev. Cell V. 38 384 2016
PubMed-ID: 27554858  |  Reference-DOI: 10.1016/J.DEVCEL.2016.07.018

(-) Compounds

Molecule 1 - PROTEIN KINASE C IOTA TYPE
    ChainsA
    EC Number2.7.11.13
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Taxid7108
    FragmentUNP RESIDUES 246-589
    GenePRKCI, DXS1179E
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymATYPICAL PROTEIN KINASE C-LAMBDA/IOTA,APKC-LAMBDA/IOTA,NPKC- IOTA
 
Molecule 2 - PAR-3 PARTITIONING DEFECTIVE 3 HOMOLOG (C. ELEGANS)
    ChainsB
    EngineeredYES
    Expression SystemSYNTHETIC CONSTRUCT
    Expression System Taxid32630
    FragmentUNP RESIDUES 816-835
    GenePARD3, TEGG053L09.1-001
    Organism CommonWESTERN CLAWED FROG
    Organism ScientificXENOPUS TROPICALIS
    Organism Taxid8364
    SynonymUNCHARACTERIZED PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 8)

Asymmetric/Biological Unit (6, 8)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2GOL1Ligand/IonGLYCEROL
3K1Ligand/IonPOTASSIUM ION
4MG2Ligand/IonMAGNESIUM ION
5SEP1Mod. Amino AcidPHOSPHOSERINE
6TPO2Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:261 , GLY A:263 , SER A:264 , TYR A:265 , ALA A:266 , VAL A:268 , ALA A:281 , LYS A:283 , ILE A:332 , GLU A:333 , VAL A:335 , ASP A:339 , ASP A:382 , ASN A:383 , LEU A:385 , ASP A:396 , PHE A:552 , MG A:604 , HOH A:716 , HOH A:725 , HOH A:733 , HOH A:746 , HOH A:774binding site for residue ANP A 601
2AC2SOFTWARETHR A:301 , ARG A:377 , CYS A:400 , LYS A:401 , GLU A:402 , TPO A:412 , HOH A:702 , HOH A:814binding site for residue GOL A 602
3AC3SOFTWAREALA A:309 , HIS A:312 , LEU A:315 , GLU A:333 , HOH A:815binding site for residue K A 603
4AC4SOFTWAREASN A:383 , ASP A:396 , ANP A:601 , HOH A:774 , HOH A:781binding site for residue MG A 604
5AC5SOFTWAREASP A:292 , GLU A:294 , ASP A:295 , LYS B:16 , THR B:18 , HOH B:113binding site for residue MG A 605

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LI1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LI1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LI1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LI1)

(-) Exons   (0, 0)

(no "Exon" information available for 5LI1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:334
                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhh.eeeeeeeee....eeeeeee.....eeeeeeee.hhh.hhhhhhhhhhhhhhhhhhh.......eeeeee...eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...................eehhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh........hhhhhhhhhhhh.............hhhhhhhhhhhhh..hhhhhh.............hhhhhhhhhhhhhh........hhhhhhhhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5li1 A 246 SFSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTStFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDITEDYLFQVILEKQIRIPRsLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNEPVQLtPDDDDIVRKIDQSEFEGFEYINPLL 589
                                   255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405      |415       425       435       445       455|      475       485       495       505       515       525       535       545       555       565       575       585    
                                                                                                                                                                                                412-TPO                                    455|               484-SEP                                                                         564-TPO                     
                                                                                                                                                                                                                                            466                                                                                                                           

Chain B from PDB  Type:PROTEIN  Length:20
                                                    
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author ............ee...... Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                 5li1 B   1 LAFQREGFGRQSMSEKRTKQ  20
                                    10        20

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LI1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LI1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LI1)

(-) Gene Ontology  (57, 57)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KPCI_HUMAN | P417431vd2 1wmh 1zrz 3a8w 3a8x 3zh8 5li9 5lih

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LI1)