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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN UDP-N-ACETYLGLUCOSAMINE-DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE (DPAGT1) (V264G MUTANT)
 
Authors :  A. C. W. Pike, Y. Y. Dong, A. Chu, A. Tessitore, S. Goubin, L. Dong, S. Mukh P. Mahajan, R. Chalk, G. Berridge, D. Wang, K. Kupinska, K. Belaya, D. B N. Burgess-Brown, A. M. Edwards, C. H. Arrowsmith, C. Bountra, E. P. Ca Structural Genomics Consortium (Sgc)
Date :  30 Jun 16  (Deposition) - 28 Dec 16  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Glycosylation, Integral Membrane Protein, Congenital Myasthenic Syndrome 13, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. C. W. Pike, Y. Y. Dong, A. Chu, A. Tessitore, S. Goubin, L. Dong, S. Mukhopadhyay, P. Mahajan, R. Chalk, G. Berridge, D. Wang, K. Kupinska, K. Belaya, D. Beeson, N. Burgess-Brown, A. M. Edwards, C. H. Arrowsmith, C. Bountra, E. P. Carpenter
Crystal Structure Of Human Udp-N-Acetylglucosamine-Dolichyl-Phosphate N-Acetylglucosaminephosphotransferase (Dpagt1) (V264G Mutant)(Casp Target)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UDP-N-ACETYLGLUCOSAMINE--DOLICHYL-PHOSPHATE N- ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE
    ChainsA
    EC Number2.7.8.15
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidPFB-LIC-BSE
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    GeneDPAGT1, DPAGT2
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGLCNAC-1-P TRANSFERASE,GPT,N-ACETYLGLUCOSAMINE-1-PHOSPHATE TRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1UNL1Ligand/IonUNKNOWN LIGAND

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:204 , LEU A:239 , TRP A:243 , ARG A:377binding site for residue PC1 A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LEV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:244 -Pro A:245

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LEV)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:375
                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee..........ee..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....ee...ee.hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhh...........ee......ee..eeeee....hhhhhhhhhhhhhh....eeeee....eeeeee..hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lev A   8 PMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLNKTSRQQIPESQGVISGAVFLIILFCFIPFPFLPHHEFVALIGALLAICCMIFLGFADDVLNLRWRHKLLLPTAASLPLLMVYFTNFGNTTIVVHLDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQSLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLYHNWYPSRVFVGDTFCYFAGMTFAGVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCPRHRIPRLNIKTGKLEMSYSKFKTKSLSFLGTFILKVAESLQLVTVHQSETEDGEFTECNNMTLINLLLKVLGPIHERNLTLLLLLLQILGSAITFSIRYQLVR 403
                                    17        27        37        47        57        67        77 ||     98       108       118       128       138       148  ||   168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398     
                                                                                                  79|                                                         151|                                                                                                                                                                                                                                                 
                                                                                                   91                                                          162                                                                                                                                                                                                                                                 

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LEV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LEV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LEV)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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