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(-) Description

Title :  SELECTIVE INHIBITION OF AUTOTAXIN IS EFFECTIVE IN MOUSE MODELS OF LIVER FIBROSIS
 
Authors :  A. J. Stein, G. Bain, J. H. Hutchinson, J. F. Evans
Date :  20 Jul 16  (Deposition) - 09 Nov 16  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.59
Chains :  Asym./Biol. Unit :  A
Keywords :  Enpp2, Autotaxin, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Bain, K. E. Shannon, F. Huang, J. Darlington, L. Goulet, P. Prodanovich, G. L. Ma, A. M. Santini, A. J. Stein, D. Lonergan, C. D. King, I. Calderon, A. Lai, J. H. Hutchinson, J. F. Evans
Selective Inhibition Of Autotaxin Is Efficacious In Mouse Models Of Liver Fibrosis.
J. Pharmacol. Exp. Ther. V. 360 1 2017
PubMed-ID: 27754931  |  Reference-DOI: 10.1124/JPET.116.237156

(-) Compounds

Molecule 1 - ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER 2
    ChainsA
    EC Number3.1.4.39
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Taxid7108
    GeneENPP2, ATX, PDNP2
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymE-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 6)

Asymmetric/Biological Unit (5, 6)
No.NameCountTypeFull Name
16Y71Ligand/Ion3-[6-CHLORANYL-2-CYCLOPROPYL-1-(1-ETHYLPYRAZOL-4-YL)-7-FLUORANYL-INDOL-3-YL]SULFANYL-2-FLUORANYL-BENZOIC ACID
2CA1Ligand/IonCALCIUM ION
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4PO41Ligand/IonPHOSPHATE ION
5ZN2Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:221 , PRO A:523 , ASN A:524 , ASN A:525 , LEU A:746 , HIS A:832 , HOH A:1003binding site for residue NAG A 901
2AC2SOFTWAREASP A:312 , HIS A:316 , HIS A:475 , PO4 A:906binding site for residue ZN A 902
3AC3SOFTWAREASP A:172 , THR A:210 , ASP A:359 , HIS A:360 , PO4 A:906binding site for residue ZN A 903
4AC4SOFTWAREASP A:740 , ASP A:742 , ASP A:744 , LEU A:746 , HIS A:747 , ASP A:748binding site for residue CA A 904
5AC5SOFTWARESER A:82 , PHE A:211 , LEU A:214 , TYR A:215 , LYS A:249 , PHE A:250 , HIS A:252 , TRP A:255 , TRP A:261 , PHE A:275 , TRP A:276 , VAL A:278binding site for residue 6Y7 A 905
6AC6SOFTWAREASP A:172 , THR A:210 , ASN A:231 , LEU A:244 , ASP A:312 , HIS A:475 , ZN A:902 , ZN A:903binding site for residue PO4 A 906

(-) SS Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1A:59 -A:76
2A:63 -A:94
3A:74 -A:87
4A:80 -A:86
5A:103 -A:120
6A:108 -A:138
7A:118 -A:131
8A:124 -A:130
9A:149 -A:195
10A:157 -A:351
11A:414 -A:806
12A:775 -A:785

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:206 -Pro A:207
2Gln A:310 -Pro A:311

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KXA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KXA)

(-) Exons   (0, 0)

(no "Exon" information available for 5KXA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:751
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................hhhhhhh........hhhhh..............hhhhhh....hhhhhhh..........................eeeeeee....hhhhhh...hhhhhhhhhhhee...ee.....hhhhhhhhhhhh.hhhhhh....eeee....eeee...hhhhhhhhh...hhhhhhhh..............hhhhhhhhhhhhh.........eeeeeeeeehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....ee.....eee.hhh..hhh.eeee...eeeeee........hhhhhhhhh........eeeee.hhhhhhhh.........eeeee....eee......ee......hhhhh..eeee.......ee...ee..hhhhhhhhh..............hhhhh..........................................ee.....eeeee...eeeeee.....eeeeeeee..................hhhhhhhh...eeee..hhhhh.hhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee..........hhhhh.............eeeeeeeee.............eeeeeeeee.............hhhhhhhhhhhhh..hhhhhhhhhhee.......hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kxa A  57 GSCKGRCFELQCRCDNLCKSYTSCCHDFDELCLKTARGWECTKDRCGEVRNEENACHCSEDCLARGDCCTNYQVVCKGESHWVDDDCEEIKAAECPAGFVRPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHSPYMRPVYPTKTFPNLYTLATGLYPESHGIVGNSMYDPVFDATFHLRGREKFNHRWWGGQPLWITATKQGVKAGTFFWSVVIPHERRILTILQWLTLPDHERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKIVGQLMDGLKQLKLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVDDITLVPGTLGRIRSKFSNNAKYDPKAIIAALTCKKPDQHFKPYLKQHLPKRLHYANNRRIEDIHLLVERRWHVARKPFFQGDHGFDNKVNSMQTVFVGYGSTFKYKTKVPPFENIELYNVMCDLLGLKPAPNNGTHGSLNHLLRTNTFRPTMPEEVTRPNYPGIMYLQSDFDLGTEERHLLYGRPAVLYRTRYDILYHTDFESGYSEIFLMPLWTSYTVSKQACVRPDVRVSPSFSQNCLAYKNDKQMSYGFLFPPYLSSSPEAKYDAFLVTNMVPMYPAFKRVWNYFQRVLVKKYASERNGVNVISGPIFDYDYDGLHDTEDKIKQYVEGSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNEESCNSSEDESKWVEELMKMHTARVRDIEHLTSLDFFRKTSRSYPEILTLKTYLHTYE 860
                                    66||      82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452     ||473       483       493       503       513       523       533       543       553       563  ||   598       608       618       628       638 ||    659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859 
                                     67|                                                                                                                                                                                                                                                                                                                                                                                             458|                                                                                             566|                                             640|                                                                                                                                                                                                                
                                      74                                                                                                                                                                                                                                                                                                                                                                                              470                                                                                              592                                              652                                                                                                                                                                                                                

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KXA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KXA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KXA)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ENPP2_HUMAN | Q138224zg6 4zg7 4zg9 4zga

(-) Related Entries Specified in the PDB File

4zg6 NEW COMPOUND WITH AUTOTAXIN
4zg7 NEW COMPOUND WITH AUTOTAXIN
4zg9 NEW COMPOUND WITH AUTOTAXIN
4zga NEW COMPOUND WITH AUTOTAXIN