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(-) Description

Title :  HMIRO1 C-DOMAIN GDP-PI COMPLEX P3121 CRYSTAL FORM
 
Authors :  J. L. Klosowiak, P. J. Focia, S. E. Rice, D. M. Freymann
Date :  08 Jul 16  (Deposition) - 21 Sep 16  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Miro, Gtpase, Parkin, Mitochondria, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. L. Klosowiak, S. Park, K. P. Smith, M. E. French, P. J. Focia, D. M. Freymann, S. E. Rice
Structural Insights Into Parkin Substrate Lysine Targeting From Minimal Miro Substrates.
Sci Rep V. 6 33019 2016
PubMed-ID: 27605430  |  Reference-DOI: 10.1038/SREP33019

(-) Compounds

Molecule 1 - MITOCHONDRIAL RHO GTPASE 1
    ChainsA
    EC Number3.6.5.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentC-TERMINAL GTPASE DOMAIN (UNP RESIDUES 411-592)
    GeneRHOT1, ARHT1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHMIRO-1,RAC-GTP-BINDING PROTEIN-LIKE PROTEIN,RAS HOMOLOG GENE FAMILY MEMBER T1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:426 , ASN A:428 , CYS A:429 , GLY A:430 , LYS A:431 , SER A:432 , GLY A:433 , LEU A:443 , LYS A:447 , LYS A:528 , ASP A:530 , LEU A:531 , THR A:558 , CYS A:559 , PO4 A:702 , HOH A:806 , HOH A:820 , HOH A:824 , HOH A:836binding site for residue GDP A 701
2AC2SOFTWARELYS A:427 , ASN A:428 , LYS A:431 , SER A:477 , GLU A:478 , GDP A:701 , HOH A:806 , HOH A:813binding site for residue PO4 A 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KSO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5KSO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5KSO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.....hhhhhhhhhh..hhhhhhhh.......eeeeeeee..eeeeeeeeee......hhhhhh..eeeeeee....hhhhhhhhhhhhhh......eeeeee.............hhhhhhhhh.....ee..........hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kso A 415 QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTEAEIICDVVCLVYDVSNPKSFEYCARIFKQHFMDSRIPCLIVAAKSDLHEVKQEYSISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMYP 580
                                   424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574      

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KSO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KSO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KSO)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MIRO1_HUMAN | Q8IXI25ksp 5ksy 5ksz 5kty 5ku1

(-) Related Entries Specified in the PDB File

5ksp 5ksy 5ksz 5kty 5ku1 5kut