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(-) Description

Title :  CRYSTAL STRUCTURE OF CBLN1 (VAL55-GLY58 DELETION MUTANT)
 
Authors :  J. Elegheert, J. E. Clay, A. R. Aricescu
Date :  05 Jun 16  (Deposition) - 27 Jul 16  (Release) - 03 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Cerebellin, Neurotransmission, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Elegheert, W. Kakegawa, J. E. Clay, N. F. Shanks, E. Behiels, K. Matsuda, K. Kohda, E. Miura, M. Rossmann, N. Mitakidis, J. Motohashi, V. T. Chang, C. Siebold, I. H. Greger, T. Nakagawa, M. Yuzaki, A. R. Aricescu
Structural Basis For Integration Of Glud Receptors Within Synaptic Organizer Complexes.
Science V. 353 295 2016
PubMed-ID: 27418511  |  Reference-DOI: 10.1126/SCIENCE.AAE0104

(-) Compounds

Molecule 1 - CEREBELLIN-1
    ChainsA, B, C
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Cell LineHEK293S
    Expression System CommonHUMAN
    Expression System PlasmidPHLSEC
    Expression System Taxid9606
    Expression System Vector TypePLASMID
    GeneCBLN1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPRECEREBELLIN

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (2x)ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:76 , ASN A:79binding site for Mono-Saccharide NAG A 301 bound to ASN A 79
2AC2SOFTWAREPRO B:74 , ASN B:79 , MET B:177binding site for Mono-Saccharide NAG B 301 bound to ASN B 79
3AC3SOFTWAREPRO C:74 , SER C:75 , GLU C:76 , ASN C:79 , MET C:177binding site for Mono-Saccharide NAG C 301 bound to ASN C 79

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KC6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5KC6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KC6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KC6)

(-) Exons   (0, 0)

(no "Exon" information available for 5KC6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.......hhhhhhhh.....eeeeee...ee....eee....eeeeeeeeeee......eeeeeee..eeeeeeee.......eeeeeeeeeee....eeeeeeee..........eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kc6 A  59 SAKVAFSAIRSTNHEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVVKVYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGWKYSTFSGFLVFPLGT 195
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       

Chain B from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee.......hhhhhhhh.....eeeeee...ee....eee....eeeeeeeeeee......eeeeeee..eeeeeeee.......eeeeeeeeeee....eeeeeeee..........eeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5kc6 B  59 SAKVAFSAIRSTNHEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVVKVYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGWKYSTFSGFLVFPLGTKHHHHHH 202
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198    

Chain C from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.......hhhhhhhh.....eeeeee...ee....eee....eeeeeeeeeee......eeeeeee..eeeeeeee.......eeeeeeeeeee....eeeeeeee..........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kc6 C  59 SAKVAFSAIRSTNHEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVVKVYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGWKYSTFSGFLVFPLG 194
                                    68        78        88        98       108       118       128       138       148       158       168       178       188      

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KC6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KC6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KC6)

(-) Gene Ontology  (13, 13)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CBLN1_HUMAN | P234355kc5 5kc7 5kca

(-) Related Entries Specified in the PDB File

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