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(-) Description

Title :  PAK1 IN COMPLEX WITH 7-AZAINDOLE INHIBITOR
 
Authors :  A. Ferguson
Date :  03 Jun 16  (Deposition) - 28 Sep 16  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.36
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Serine/Threonine-Protein Kinase Pak1, Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. Mccoull, E. J. Hennessy, K. Blades, C. Chuaqui, J. E. Dowling, A. D. Ferguson, F. W. Goldberg, N. Howe, C. R. Jones, P. D. Kemmitt, G. Lamont, J. G. Varnes, R. A. Ward, B. Yang
Optimization Of Highly Kinase Selective Bis-Anilino Pyrimidine Pak1 Inhibitors.
Acs Med Chem Lett V. 7 1118 2016
PubMed-ID: 27994749  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.6B00322

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE PAK 1
    ChainsA, B
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GenePAK1
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymALPHA-PAK,P21-ACTIVATED KINASE 1,PAK-1,P65-PAK

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1IPW2Ligand/Ion(4-CHLOROPHENYL)-[5-(1-PIPERIDIN-4-YLPYRAZOL-4-YL)-1~{H}-PYRROLO[2,3-B]PYRIDIN-3-YL]METHANONE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1IPW1Ligand/Ion(4-CHLOROPHENYL)-[5-(1-PIPERIDIN-4-YLPYRAZOL-4-YL)-1~{H}-PYRROLO[2,3-B]PYRIDIN-3-YL]METHANONE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1IPW1Ligand/Ion(4-CHLOROPHENYL)-[5-(1-PIPERIDIN-4-YLPYRAZOL-4-YL)-1~{H}-PYRROLO[2,3-B]PYRIDIN-3-YL]METHANONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:276 , VAL A:284 , ALA A:297 , LYS A:299 , GLU A:315 , MET A:319 , VAL A:328 , MET A:344 , GLU A:345 , TYR A:346 , LEU A:347 , LEU A:396 , THR A:406binding site for residue IPW A 601
2AC2SOFTWAREVAL B:284 , ALA B:297 , LYS B:299 , VAL B:342 , MET B:344 , GLU B:345 , TYR B:346 , LEU B:347 , GLY B:350 , ASP B:354 , LEU B:396binding site for residue IPW B 601

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:360 -B:360

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5KBR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KBR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KBR)

(-) Exons   (0, 0)

(no "Exon" information available for 5KBR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeee....eeee..eeee..hhhhhhhhhhhh.......eee...eeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee..............hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kbr A 255 EKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAEVAIKQELIINEILVMRENKNPNIVNYLDSYWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRNIKSDNILLGMDGSVKLTDFGFCAKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKPLSSLTPLIAAAKEATK 542
                                   264       274       284  ||   310       320       330   ||  346       356       366       376       386       396       406     ||423       433       443       453       463       473       483       493       503       513       523       533         
                                                          287|  300|                     334|                                                                    412|                                                                                                                          
                                                           295   310                      341                                                                     420                                                                                                                          

Chain B from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh....hhhhheeeeee...eeeeee.....eeeeee..hhhhhhhh.......eeeeeee..eeeeeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...............hhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh......hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kbr B 255 EKLRSIVSVGDPKKKYTRFEKIGTVYTAMDVATGQEVAIKQMNEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRNIKSDNILLGMDGSVKLTDSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKPLSSLTPLIAAAKEATK 542
                                   264       274  ||   289       299 ||    321       331       341       351       361       371       381       391       401     ||422       432       442       452       462       472       482       492       502       512       522       532       542
                                                277|               301|                                                                                          407|                                                                                                                           
                                                 283                314                                                                                           419                                                                                                                           

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KBR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KBR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KBR)

(-) Gene Ontology  (61, 61)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAK1_HUMAN | Q131531f3m 1yhv 1yhw 1zsg 2hy8 2qme 3dvp 3fxz 3fy0 3q4z 3q52 3q53 4daw 4eqc 4o0r 4o0t 4p90 4zji 4zjj 4zlo 4zy4 4zy5 4zy6 5dew 5dey 5dfp 5ime 5kbq

(-) Related Entries Specified in the PDB File

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