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(-) Description

Title :  POTENT, REVERSIBLE METAP2 INHIBITORS VIA FBDD
 
Authors :  D. R. Dougan, J. D. Lawson
Date :  21 Apr 16  (Deposition) - 25 May 16  (Release) - 15 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Peptidase, Metal Ion Binding, Proteolysis, Hydrolase4- Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Cheruvallath, M. Tang, C. Mcbride, M. Komandla, J. Miura, T. Ton-Nu P. Erikson, J. Feng, P. Farrell, J. D. Lawson, D. Vanderpool, Y. Wu, D. R. Dougan, A. Plonowski, C. Holub, C. Larson
Discovery Of Potent, Reversible Metap2 Inhibitors Via Fragment Based Drug Discovery And Structure Based Drug Design-Part 1.
Bioorg. Med. Chem. Lett. V. 26 2774 2016
PubMed-ID: 27155900  |  Reference-DOI: 10.1016/J.BMCL.2016.04.073

(-) Compounds

Molecule 1 - METHIONINE AMINOPEPTIDASE 2
    ChainsA
    EC Number3.4.11.18
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System StrainSF9
    Expression System Taxid7108
    FragmentUNP RESIDUES 87-455
    GeneMETAP2, MNPEP, P67EIF2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMETAP 2,INITIATION FACTOR 2-ASSOCIATED 67 KDA GLYCOPROTEIN, P67EIF2,PEPTIDASE M

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
16KN1Ligand/Ion4-(3-METHYLPYRIDIN-4-YL)-6-(TRIFLUOROMETHYL)-1H-INDAZOLE
2MN2Ligand/IonMANGANESE (II) ION
3SO41Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:251 , ASP A:262 , GLU A:459 , MN A:502 , HOH A:605 , HOH A:620binding site for residue MN A 501
2AC2SOFTWAREASP A:262 , HIS A:331 , GLU A:364 , GLU A:459 , MN A:501 , 6KN A:504 , HOH A:620binding site for residue MN A 502
3AC3SOFTWAREHIS A:391 , HOH A:668binding site for residue SO4 A 503
4AC4SOFTWAREHIS A:231 , ASP A:262 , HIS A:331 , ILE A:338 , HIS A:339 , GLU A:364 , HIS A:382 , MET A:384 , ALA A:414 , TYR A:444 , MN A:502 , HOH A:605 , HOH A:620binding site for residue 6KN A 504

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:228 -A:448

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:114 -Pro A:115

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JI6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JI6)

(-) Exons   (0, 0)

(no "Exon" information available for 5JI6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:368
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh........eee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.hhh.eeeeeeeeeee..eee.................eeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..eeee..eeee.ee.....eee..........ee..............eeeeeeeee......ee.....eeee..........hhhhhhhhhhhhhhh....eehhhhhhh....hhhhhhhhhhh..eeee..ee......eeeeeeeeee....eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ji6 A 110 KVQTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGEATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEVVSRGDDY 478
                                   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       350       360       370       380       390       400       410       420       430       440       450       460       470        
                                                                                                                                                                                                                                                                        348|                                                                                                                                
                                                                                                                                                                                                                                                                         350                                                                                                                                

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JI6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JI6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JI6)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:114 - Pro A:115   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MAP2_HUMAN | P505791b59 1b6a 1bn5 1boa 1kq0 1kq9 1qzy 1r58 1r5g 1r5h 1yw7 1yw8 1yw9 2adu 2ea2 2ea4 2ga2 2oaz 5cls 5d6e 5d6f 5jfr 5jhu

(-) Related Entries Specified in the PDB File

5jfr 5jhu