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(-) Description

Title :  SOLUTION STRUCTURE OF RAS BINDING DOMAIN (RBD) OF B-RAF COMPLEXED WITH RIGOSERTIB (COMPLEX I)
 
Authors :  K. Dutta, R. Vasquez-Del Carpio, A. K. Aggarwal, E. P. Reddy
Date :  29 Mar 16  (Deposition) - 04 May 16  (Release) - 04 May 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Mapk, Pi3K, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. K. Athuluri-Divakar, R. Vasquez-Del Carpio, K. Dutta, S. J. Baker S. C. Cosenza, I. Basu, Y. K. Gupta, M. V. Reddy, L. Ueno, J. R. Hart, P. K. Vogt, D. Mulholland, C. Guha, A. K. Aggarwal, E. P. Reddy
A Small Molecule Ras-Mimetic Disrupts Ras Association With Effector Proteins To Block Signaling.
Cell V. 165 643 2016
PubMed-ID: 27104980  |  Reference-DOI: 10.1016/J.CELL.2016.03.045

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE B-RAF
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21 DE3 PLYSS
    Expression System Taxid469008
    GeneBRAF, BRAF1, RAFB1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE HOMOLOG B1

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
16FS1Ligand/IonN-[2-METHOXY-5-({[(E)-2-(2,4,6-TRIMETHOXYPHENYL)ETHENYL]SULFONYL}METHYL)PHENYL]GLYCINE
NMR Structure * (1, 1)
No.NameCountTypeFull Name
16FS1Ligand/IonN-[2-METHOXY-5-({[(E)-2-(2,4,6-TRIMETHOXYPHENYL)ETHENYL]SULFONYL}METHYL)PHENYL]GLYCINE

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:154 , ILE A:156 , ARG A:166 , THR A:167 , VAL A:168 , MET A:187binding site for residue 6FS A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J18)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5J18)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J18)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J18)

(-) Exons   (0, 0)

(no "Exon" information available for 5J18)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:82
                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeehhhhh.eeee.....hhhhhhhhhhhhh..hhh.eeeeee....eee.....hhhhh....eeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 5j18 A 151 SPQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLTGEELHVEVLENVPL 232
                                   160       170       180       190       200       210       220       230  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J18)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J18)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J18)

(-) Gene Ontology  (64, 64)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRAF_HUMAN | P150561uwh 1uwj 2fb8 2l05 3c4c 3d4q 3idp 3ii5 3ny5 3og7 3ppj 3ppk 3prf 3pri 3psb 3psd 3q4c 3q96 3skc 3tv4 3tv6 4cqe 4dbn 4e26 4e4x 4ehe 4ehg 4fc0 4fk3 4g9c 4g9r 4h58 4jvg 4ksp 4ksq 4mbj 4mne 4mnf 4pp7 4r5y 4rzv 4rzw 4wo5 4xv1 4xv2 4xv3 4xv9 4yht 5c9c 5csw 5csx 5ct7 5fd2 5hi2 5hid 5hie 5ita 5j17 5j2r 5jrq 5jsm 5jt2 5val 5vam

(-) Related Entries Specified in the PDB File

5j17 5j2r