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(-) Description

Title :  COMPARISON OF X-RAY CRYSTAL STRUCTURES OF A TETRADECAMER SEQUENCE D(CCCGGGTACCCGGG)2 AT 1.7 RESOLUTION
 
Authors :  S. Karthik, A. Thirugnanasambandam, P. K. Mandal, N. Gautham
Date :  24 Mar 16  (Deposition) - 29 Mar 17  (Release) - 19 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  A-Dna Duplex, Tetragonal Space Group, Co-Crystallization With Magnesium Chloride. , Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Karthik, A. Thirugnanasambandam, P. K. Mandal, N. Gautham
Comparison Of X-Ray Crystal Structures Of A Tetradecamer Sequence D(Cccgggtacccggg)2 At 1. 7 Angstrom Resolution.
Nucleosides Nucleotides 1 2017 Nucleic Acids
PubMed-ID: 28387634  |  Reference-DOI: 10.1080/15257770.2017.1287378

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*CP*CP*GP*GP*GP*TP*AP*CP*CP*CP*GP*GP*G)-3')
    ChainsA, B
    EngineeredYES
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5IYG)

(-) Sites  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:DNA  Length:14
                                             
                  5iyg A  1 CCCGGGTACCCGGG 14
                                    10    

Chain B from PDB  Type:DNA  Length:14
                                             
                  5iyg B  1 CCCGGGTACCCGGG 14
                                    10    

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IYG)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

5iye THE SAME OLIGONUCLEOTIDE SEQUENCE COMPLEXED WITH ZINC LIGAND.
5iyj THE SAME OLIGONUCLEOTIDE SEQUENCE CRYSTALLIZED WITHOUT ANY METAL IONS EXCEPT FOR SODIUM IN THE BUFFER