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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN SOLUBLE CYCLASE IN COMPLEX WITH THE ALLOSTERIC INHIBITOR LRE1
 
Authors :  S. Kleinboelting, C. Steegborn
Date :  18 Mar 16  (Deposition) - 17 Aug 16  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.79
Chains :  Asym./Biol. Unit :  A
Keywords :  Human Soluble Adenylyl Cyclase Complex Lre1 Inhibitor, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Ramos-Espiritu, S. Kleinboelting, F. A. Navarrete, A. Alvau, P. E. Visconti, F. Valsecchi, A. Starkov, G. Manfredi, H. Buck, C. Adura, J. H. Zippin, J. Van Den Heuvel, J. F. Glickman, C. Steegborn, L. R. Levin, J. Buck
Discovery Of Lre1 As A Specific And Allosteric Inhibitor Of Soluble Adenylyl Cyclase.
Nat. Chem. Biol. V. 12 838 2016
PubMed-ID: 27547922  |  Reference-DOI: 10.1038/NCHEMBIO.2151

(-) Compounds

Molecule 1 - ADENYLATE CYCLASE TYPE 10
    Chains: A
    EC Number: 4.6.1.1
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Gene: ADCY10, SAC
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CYS255 MODIFIED BY BME WHICH IS IN THE PURIFICATION BUFFER
    Synonym: AH-RELATED PROTEIN,ADENYLATE CYCLASE HOMOLOG,GERM CELL SOLUBLE ADENYLYL CYCLASE,SAC,TESTICULAR SOLUBLE ADENYLYL CYCLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 16)

Asymmetric/Biological Unit (8, 16)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CL1Ligand/IonCHLORIDE ION
3CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
4DMS4Ligand/IonDIMETHYL SULFOXIDE
5EDO5Ligand/Ion1,2-ETHANEDIOL
6GOL1Ligand/IonGLYCEROL
7LRI1Ligand/Ion6-CHLORO-N~4~-CYCLOPROPYL-N~4~-[(THIOPHEN-2-YL)METHYL]PYRIMIDINE-2,4-DIAMINE
8PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:45 , LEU A:102 , PHE A:165 , VAL A:167 , VAL A:172 , VAL A:175 , ARG A:176 , PHE A:336 , MET A:337binding site for residue LRI A 501
02AC2SOFTWAREASP A:278 , ASN A:279 , GLN A:283binding site for residue ACT A 502
03AC3SOFTWARELYS A:95 , HIS A:164 , ASN A:333 , LYS A:334 , VAL A:335 , GOL A:515 , HOH A:654binding site for residue ACT A 503
04AC4SOFTWAREGLN A:409 , HOH A:606 , HOH A:609binding site for residue EDO A 504
05AC5SOFTWAREHOH A:755 , HOH A:781 , HOH A:840binding site for residue EDO A 505
06AC6SOFTWAREPHE A:230 , THR A:231 , THR A:234 , HOH A:807 , HOH A:814binding site for residue EDO A 506
07AC7SOFTWAREPRO A:31 , GLY A:158 , GLU A:160binding site for residue EDO A 507
08AC8SOFTWAREASN A:298 , PHE A:336 , PHE A:338 , GLY A:341 , SER A:343 , HOH A:642binding site for residue EDO A 508
09AC9SOFTWARETYR A:77 , HIS A:78 , ALA A:81 , LEU A:129 , PHE A:130 , HOH A:951binding site for residue DMS A 509
10AD1SOFTWAREILE A:88 , PHE A:89 , PHE A:226 , PHE A:230binding site for residue DMS A 510
11AD2SOFTWAREILE A:24 , GLY A:27 , PHE A:29 , LEU A:261 , TYR A:268binding site for residue DMS A 511
12AD3SOFTWAREPHE A:8 , TRP A:11 , SER A:80 , HIS A:398 , THR A:399 , HOH A:630 , HOH A:885binding site for residue DMS A 512
13AD4SOFTWAREGLN A:409binding site for residue CL A 513
14AD5SOFTWAREHIS A:162 , HIS A:164 , TYR A:318 , THR A:322 , LYS A:326 , GLY A:330binding site for residue PEG A 514
15AD6SOFTWAREHIS A:19 , PHE A:165 , TYR A:268 , LYS A:334 , ACT A:503 , HOH A:628 , HOH A:654binding site for residue GOL A 515

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IV4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:33 -Pro A:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IV4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IV4)

(-) Exons   (0, 0)

(no "Exon" information available for 5IV4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:461
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh..hhhhhh........eeeeeeeeeeeeeeehhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeeee.hhhhhhhhhhhhhhhhhhhhhhh...eee..ee.eeeeeeeeeeeeeeeee....eeeeeehhhhhhhhhhhhhh....eeehhhhhhhh....eeeeee..eeeeeeeee......hhhhhhhhhhh......hhhhh...hhhhhh..hhhhhhhhhh..hhhhhhhhh.........eeeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee..eeeeeeee........hhhhhhhhhhhhhhhhh......eeeeeeeeeeeeeeeeee..eeeeeeehhhhhhhhhhhhhh...eeehhhhhhhh..hhh.eee...............eee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iv4 A   7 EFQDWPIVRIAAHLPDLIVYGHFSPERPFMDYFDGVLMFVDISGFTAMTEKFSSAMYMDRGAEQLVEILNYHISAIVEKVLIFGGDILKFAGDALLALWRVERKQLKNIITVVIKCSLEIHGLFETQEWEEGLDIRVKIGLAAGHISMLVFGDETHSHFLVIGQAVDDVRLAQNMAQMNDVILSPNCWQLCDRSMIEIESVPDQRAVKVNFLKPPPNFNFDEFFTKCTTFMHYYPSGEHKNLLRLAcTLKPDPELEMSLQKYVMESILKQIDNKQLQGYLSELRPVTIVFVNLMFEDQDKAEEIGPAIQDAYMHITSVLKIFQGQINKVFMFDKGCSFLCVFGFPGEKVDELTHALECAMDIFDFCSQVHKIQTVSIGVASGIVFCGIVGHTVRHEYTVIGQKVNLAARMMMYYPGIVTCDSVTYNGSNLPAYFFKELPKKVMKGVADSGPLYQYWGRTEK 468
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246      |256       266       276       286       296       306       316       326       336       346       357       367       377       387       397       407       417       427       437       447       457       467 
                                                                                                                                                                                                                                                                                253-CME                                                                                               355|                                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                       357
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IV4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IV4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IV4)

(-) Gene Ontology  (35, 35)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:33 - Pro A:34   [ RasMol ]  
 

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 Related Entries

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UniProtKB/Swiss-Prot
        ADCYA_HUMAN | Q96PN6: 4clf 4clk 4cll 4clp 4cls 4clt 4clu 4clw 4cly 4clz 4cm0 4cm2 4oya 4oyb 4oyi 4oym 4oyo 4oyp 4oyw 4oyx 4oyz 4oz2 4oz3 4ust 4usu 4usv 4usw 5d0r 5iv3

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