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(-) Description

Title :  STRUCTURE OF OMOMYC BOUND TO DOUBLE-STRANDED DNA
 
Authors :  W. Koelmel, L. A. Jung, J. Kuper, M. Eilers, C. Kisker
Date :  13 Feb 16  (Deposition) - 26 Oct 16  (Release) - 19 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Leucine Zipper, Transcription Factor, Tumor Suppressor, E-Box, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. A. Jung, A. Gebhardt, W. Koelmel, C. P. Ade, S. Walz, J. Kuper, B. Von Eyss, S. Letschert, C. Redel, L. D'Artista, A. Biankin, L. Zender, M. Sauer, E. Wolf, G. Evan, C. Kisker, M. Eilers
Omomyc Blunts Promoter Invasion By Oncogenic Myc To Inhibit Gene Expression Characteristic Of Myc-Dependent Tumors.
Oncogene V. 36 1911 2017
PubMed-ID: 27748763  |  Reference-DOI: 10.1038/ONC.2016.354

(-) Compounds

Molecule 1 - MYC PROTO-ONCOGENE PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: OMOMYC, UNP RESIDUES 350-439
    Gene: MYC, BHLHE39
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 39,BHLHE39,PROTO- ONCOGENE C-MYC,TRANSCRIPTION FACTOR P64
 
Molecule 2 - DNA (5'- D(P*CP*AP*CP*CP*CP*GP*GP*TP*CP*AP*CP*GP*TP*GP*GP*CP*CP*TP*AP*CP*AP*C) -3')
    Chains: C
    Engineered: YES
    Organism Scientific: UNIDENTIFIED
    Organism Taxid: 32644
    Synthetic: YES
 
Molecule 3 - DNA (5'- D(P*GP*TP*GP*TP*AP*GP*GP*CP*CP*AP*CP*GP*TP*GP*AP*CP*CP*GP*GP*GP*TP*G) -3')
    Chains: D
    Engineered: YES
    Organism Scientific: UNIDENTIFIED
    Organism Taxid: 32644
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5I50)

(-) Sites  (0, 0)

(no "Site" information available for 5I50)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:91 -B:91

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5I50)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I50)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I50)

(-) Exons   (0, 0)

(no "Exon" information available for 5I50)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:92
                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  5i50 A  1 MATEENVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAETQKLISEIDLLRKQNEQLKHKLEQLRNSCA 92
                                    10        20        30        40        50        60        70        80        90  


Chain B from PDB  Type:PROTEIN  Length:96
                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  5i50 B -3 FQGAMATEENVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAETQKLISEIDLLRKQNEQLKHKLEQLRNSCA 92
                                     6        16        26        36        46        56        66        76        86      


Chain C from PDB  Type:DNA  Length:22
                                                     
                  5i50 C  1 CACCCGGTCACGTGGCCTACAC 22
                                    10        20  


Chain D from PDB  Type:DNA  Length:22
                                                     
                  5i50 D  1 GTGTAGGCCACGTGACCGGGTG 22
                                    10        20
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I50)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I50)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I50)

(-) Gene Ontology  (54, 54)

Asymmetric/Biological Unit(hide GO term definitions)

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  5i50
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  MYC_HUMAN | P01106
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MYC_HUMAN | P01106: 1a93 1ee4 1mv0 1nkp 2a93 2or9 4y7r 5i4z

(-) Related Entries Specified in the PDB File

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