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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN BMP9 AT 1.87 A RESOLUTION
 
Authors :  T. Saito, M. Bokhove, L. Jovine
Date :  03 Feb 16  (Deposition) - 07 Jun 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.87
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Growth Differentiation Factor 2, Cell Proliferation Signal, Cytokine, Angiogenesis, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Saito, M. Bokhove, R. Croci, S. Zamora-Caballero, L. Han, M. Letarte, D. De Sanctis, L. Jovine
Structural Basis Of The Human Endoglin-Bmp9 Interaction: Insights Into Bmp Signaling And Hht1.
Cell Rep V. 19 1917 2017
PubMed-ID: 28564608  |  Reference-DOI: 10.1016/J.CELREP.2017.05.011
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GROWTH/DIFFERENTIATION FACTOR 2
    CellENDOTHELIAL
    ChainsA
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Atcc NumberCRL-3022
    Expression System Cell LineHEK293S
    Expression System CommonHUMAN
    Expression System PlasmidPHLSEC
    Expression System Taxid9606
    FragmentUNP RESIDUES 320-429
    GeneGDF2, BMP9
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsMATURE BMP9
    SynonymGDF-2,BONE MORPHOGENETIC PROTEIN 9,BMP-9

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:81 , ILE A:82 , SER A:83 , TYR A:97 , HIS A:98binding site for residue GOL A 900
2AC2SOFTWAREALA A:4 , GLY A:5 , HIS A:7binding site for residue GOL A 901

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:8 -A:74
2A:37 -A:107
3A:41 -A:109
4A:73 -A:73

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:28 -Pro A:29
2Phe A:43 -Pro A:44

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I05)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I05)

(-) Exons   (0, 0)

(no "Exon" information available for 5I05)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eee.........eee..eee..eee.......hhhhh.hhhhhhhhhhhhhh........eeeeeeeeeeeeee.....eeeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5i05 A   4 AGSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTKVGKACCVPTKLSPISVLYKDDMGVPTLKYHYEGMSVAECGCR 110
                                    13        23        33        43        53        63        73        83        93       103       

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I05)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I05)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I05)

(-) Gene Ontology  (43, 43)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GDF2_HUMAN | Q9UK051zkz 4fao 4mpl 4ycg 4yci 5hzw

(-) Related Entries Specified in the PDB File

5hzv CRYSTAL STRUCTURE OF THE ZONA PELLUCIDA MODULE OF HUMAN ENDOGLIN/ CD105
5hzw CRYSTAL STRUCTURE OF THE ORPHAN REGION OF HUMAN ENDOGLIN/CD105 IN COMPLEX WITH BMP9
5i04 CRYSTAL STRUCTURE OF THE ORPHAN REGION OF HUMAN ENDOGLIN/CD105