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(-) Description

Title :  ESTROGEN RECEPTOR ALPHA LIGAND BINDING DOMAIN Y537S MUTANT IN COMPLEX WITH STAPLED PEPTIDE SRC2-SP2 AND ESTRADIOL
 
Authors :  S. W. Fanning, T. E. Speltz, C. G. Mayne, E. Tajkhorshid, G. L. Greene, T.
Date :  01 Feb 16  (Deposition) - 25 May 16  (Release) - 25 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.27
Chains :  Asym./Biol. Unit :  A,B,F,G
Keywords :  Breast Cancer, Estrogen Receptor, Synthetic Peptide, Stapled Peptide, Endocrine, Hormone, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. E. Speltz, S. W. Fanning, C. G. Mayne, C. Fowler, E. Tajkhorshid, G. L. Greene, T. W. Moore
Stapled Peptides With Gamma-Methylated Hydrocarbon Chains For The Estrogen Receptor/Coactivator Interaction.
Angew. Chem. Int. Ed. Engl. V. 55 4252 2016
PubMed-ID: 26928945  |  Reference-DOI: 10.1002/ANIE.201510557

(-) Compounds

Molecule 1 - ESTROGEN RECEPTOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 302-559
    Gene: ESR1, ESR, NR3A1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 GROUP A MEMBER 1
 
Molecule 2 - STAPLED PEPTIDE SRC2-SP2
    Chains: F, G
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 12)

Asymmetric/Biological Unit (6, 12)
No.NameCountTypeFull Name
166D2Mod. Amino Acid(4R)-2,4-DIMETHYL-L-NORLEUCINE
2ACE2Mod. Amino AcidACETYL GROUP
3EST2Ligand/IonESTRADIOL
4GOL2Ligand/IonGLYCEROL
5MK82Mod. Amino Acid2-METHYL-L-NORLEUCINE
6NH22Mod. Amino AcidAMINO GROUP

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:343 , LEU A:346 , ALA A:350 , GLU A:353 , ARG A:394 , PHE A:404 , HIS A:524 , LEU A:525binding site for residue EST A 601
02AC2SOFTWAREASP A:351 , VAL A:355 , SER A:537 , HOH A:717 , TYR B:331binding site for residue GOL A 602
03AC3SOFTWAREMET B:343 , LEU B:346 , GLU B:353 , LEU B:387 , MET B:388 , ARG B:394 , HIS B:524 , LEU B:525 , HOH B:709binding site for residue EST B 601
04AC4SOFTWARESER A:329 , GLU A:330 , ASP B:351 , VAL B:355 , SER B:537 , LEU B:539binding site for residue GOL B 602
05AC5SOFTWARELYS A:362 , GLN F:10 , ASP F:11 , SER F:12binding site for Ligand NH2 F 13 bound to SER F 12
06AC6SOFTWARESER G:12binding site for Ligand NH2 G 13 bound to SER G 12
07AC7SOFTWARELYS F:3 , 66D F:4 , HIS F:6binding site for Di-peptide ACE F 1 and HIS F 2
08AC8SOFTWAREGLU A:380 , LEU A:539 , GLU A:542 , HIS F:2 , LEU F:5 , HIS F:6 , ARG F:7 , MK8 F:8binding site for Di-peptide LYS F 3 and 66D F 4
09AC9SOFTWARELEU A:539 , GLU A:542 , HIS F:2 , LYS F:3 , LEU F:5 , HIS F:6 , ARG F:7 , LEU F:9 , GLN F:10 , ASP F:11binding site for residues 66D F 4 and MK8 F 8
10AD1SOFTWAREILE A:358 , LEU A:539 , GLU A:542 , HIS F:2 , LYS F:3 , HIS F:6 , ARG F:7 , MK8 F:8 , LEU F:9binding site for Di-peptide 66D F 4 and LEU F 5
11AD2SOFTWARELYS F:3 , 66D F:4 , LEU F:5 , HIS F:6 , LEU F:9 , GLN F:10 , ASP F:11binding site for Di-peptide ARG F 7 and MK8 F 8
12AD3SOFTWARELYS A:362 , GLN A:375 , 66D F:4 , LEU F:5 , HIS F:6 , ARG F:7 , GLN F:10 , ASP F:11 , HOH F:104binding site for Di-peptide MK8 F 8 and LEU F 9
13AD4SOFTWARELYS G:3binding site for Di-peptide ACE G 1 and HIS G 2
14AD5SOFTWAREVAL B:376 , GLU B:380 , LEU B:539 , GLU B:542 , ACE G:1 , HIS G:2 , LEU G:5 , HIS G:6 , ARG G:7 , MK8 G:8binding site for Di-peptide LYS G 3 and 66D G 4
15AD6SOFTWAREGLU B:380 , LEU B:539 , GLU B:542 , LYS G:3 , HIS G:6 , ARG G:7 , MK8 G:8 , LEU G:9binding site for Di-peptide 66D G 4 and LEU G 5
16AD7SOFTWARELEU B:539 , GLU B:542 , LYS G:3 , LEU G:5 , HIS G:6 , ARG G:7 , LEU G:9 , GLN G:10binding site for residues 66D G 4 and MK8 G 8
17AD8SOFTWAREPRO A:333 , LYS G:3 , 66D G:4 , LEU G:5 , HIS G:6 , LEU G:9 , GLN G:10binding site for Di-peptide ARG G 7 and MK8 G 8
18AD9SOFTWARELYS B:362 , GLN B:375 , 66D G:4 , LEU G:5 , HIS G:6 , ARG G:7 , GLN G:10binding site for Di-peptide MK8 G 8 and LEU G 9

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HYR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HYR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HYR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HYR)

(-) Exons   (0, 0)

(no "Exon" information available for 5HYR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee..eeehhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hyr A 307 ALSLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHL 549
                                   316       326       336       346       356       366       376       386       396       406       416       426       436       446       456    || 477       487       497       507       517       527       537       547|
                                                                                                                                                                                    461|                                                                       547|
                                                                                                                                                                                     473                                                                        549


Chain B from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeee.hhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hyr B 307 ALSLTADQMVSALLDAEPPILYSEYSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAH 547
                                   316       326    || 342       352       362       372       382       392       402       412       422       432       442       452       474       484       494       504       514       524       534       544   
                                                  331|                                                                                                                       460|                                                                          
                                                   338                                                                                                                        473                                                                          


Chain F from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 5hyr F   1 xHKxLHRxLQDSx  13
                            |  |   |10  |
                            1-ACE  |    |
                               4-66D    |
                                   8-MK8|
                                       13-NH2


Chain G from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 5hyr G   1 xHKxLHRxLQDSx  13
                            |  |   |10  |
                            |  |   |    |
                            1-ACE  |    |
                               4-66D    |
                                   8-MK8|
                                       13-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HYR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HYR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HYR)

(-) Gene Ontology  (138, 152)

Asymmetric/Biological Unit(hide GO term definitions)

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  5hyr
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  ESR1_HUMAN | P03372
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  NCOA2_HUMAN | Q15596
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ESR1_HUMAN | P03372: 1a52 1akf 1ere 1err 1g50 1gwq 1gwr 1hcp 1hcq 1l2i 1pcg 1qkt 1qku 1r5k 1sj0 1uom 1x7e 1x7r 1xp1 1xp6 1xp9 1xpc 1xqc 1yim 1yin 1zky 2ayr 2b1v 2b1z 2b23 2bj4 2fai 2g44 2g5o 2i0j 2iog 2iok 2jf9 2jfa 2llo 2llq 2ocf 2ouz 2p15 2pog 2q6j 2q70 2qa6 2qa8 2qab 2qe4 2qgt 2qgw 2qh6 2qr9 2qse 2qxm 2qxs 2qzo 2r6w 2r6y 2yat 2yja 3cbm 3cbo 3cbp 3dt3 3erd 3ert 3hlv 3hm1 3l03 3os8 3os9 3osa 3q95 3q97 3uu7 3uua 3uuc 3uud 4aa6 4dma 4iu7 4iui 4iv2 4iv4 4ivw 4ivy 4iw6 4iw8 4iwc 4iwf 4jc3 4jdd 4mg5 4mg6 4mg7 4mg8 4mg9 4mga 4mgb 4mgc 4mgd 4o6f 4pp6 4ppp 4pps 4pxm 4q13 4q50 4tuz 4tv1 4xi3 4zn7 4zn9 4znh 4zns 4znt 4znu 4znv 4znw 5aau 5aav 5acc 5ak2 5di7 5did 5die 5dig 5dk9 5dkb 5dke 5dkg 5dks 5dl4 5dlr 5dmc 5dmf 5dp0 5drj 5drm 5dtv 5du5 5due 5dug 5duh 5dvs 5dvv 5dwe 5dwg 5dwi 5dwj 5dx3 5dxb 5dxe 5dxg 5dxk 5dxm 5dxp 5dxq 5dxr 5dy8 5dyb 5dyd 5dz0 5dz1 5dz3 5dzh 5dzi 5e0w 5e0x 5e14 5e15 5e19 5e1c 5egv 5ehj 5ei1 5eit 5fqp 5fqr 5fqs 5fqt 5fqv 5jmm 5kcc 5kcd 5kce 5kcf 5kct 5kcu 5kcw 5kd9 5kr9 5kra 5krc 5krf 5krh 5kri 5krj 5krk 5krl 5krm 5kro 5n10 5t0x 5t92 5t97 5tld 5tlf 5tlg 5tll 5tlm 5tlo 5tlp 5tlt 5tlu 5tlv 5tlx 5tly 5tm1 5tm2 5tm3 5tm4 5tm5 5tm6 5tm7 5tm8 5tm9 5tml 5tmm 5tmo 5tmq 5tmr 5tms 5tmt 5tmu 5tmv 5tmw 5tmz 5tn1 5tn3 5tn4 5tn5 5tn6 5tn7 5tn8 5tn9 5tnb 5u2b 5u2d
        NCOA2_HUMAN | Q15596: 1gwq 1gwr 1m2z 1mv9 1mvc 1mzn 1p93 1t63 1t65 1uhl 1yok 1zdt 1zdu 1zky 2ao6 2b1v 2b1z 2b23 2fai 2g44 2g5o 2ldc 2p15 2p1t 2p1u 2p1v 2q7j 2q7l 2yjd 2zxz 2zy0 3a9e 3cld 3dzu 3dzy 3e00 3e7c 3e94 3erd 3fug 3gn8 3k22 3k23 3kwy 3kyt 3l0e 3l0j 3l0l 3o1d 3o1e 3oap 3ozj 3pcu 3plz 3q95 3q97 3r5m 3up0 3up3 4csj 4dos 4e2j 4fhh 4fhi 4ia1 4ia2 4ia3 4ia7 4iqr 4iu7 4iui 4iv2 4iv4 4ivw 4ivy 4iw6 4iw8 4iwc 4iwf 4k4j 4k6i 4m8e 4m8h 4nie 4nqa 4oc7 4p6w 4p6x 4pld 4ple 4poh 4poj 4pp3 4pp5 4pp6 4ppp 4pps 4pxm 4q0a 4qe6 4qe8 4rfw 4rmc 4rmd 4rme 4ruo 4udc 4udd 4wg0 4zn7 4zn9 4znh 4zns 4znt 4znu 4znv 4znw 4zo1 4zsh 5aph 5apj 5di7 5did 5die 5dig 5dk9 5dkb 5dke 5dkg 5dks 5dl4 5dlr 5dmc 5dmf 5dp0 5drj 5drm 5dtv 5du5 5due 5dug 5duh 5dvs 5dvv 5dwe 5dwg 5dwi 5dwj 5dx3 5dxb 5dxe 5dxg 5dxk 5dxm 5dxp 5dxq 5dxr 5dy8 5dyb 5dyd 5dz0 5dz1 5dz3 5dzh 5dzi 5e0w 5e0x 5e14 5e15 5e19 5e1c 5ec9 5egv 5ehj 5ei1 5eit 5g3j 5g42 5g43 5g44 5g45 5g46 5g5w 5h1e 5i4v 5iaw 5ick 5kcc 5kcd 5kce 5kcf 5kct 5kcu 5kcw 5kd9 5kr9 5kra 5krc 5krf 5krh 5kri 5krj 5krk 5krl 5krm 5kro 5l11 5lga 5syz 5tld 5tlf 5tlg 5tll 5tlm 5tlo 5tlp 5tlt 5tlu 5tlv 5tlx 5tly 5tm1 5tm2 5tm3 5tm4 5tm5 5tm6 5tm7 5tm8 5tm9 5tml 5tmm 5tmo 5tmq 5tmr 5tms 5tmt 5tmu 5tmv 5tmw 5tmz 5tn1 5tn3 5tn4 5tn5 5tn6 5tn7 5tn8 5u2d

(-) Related Entries Specified in the PDB File

5dx3 5DX3 CONTAINS THE SAME PROTEIN IN COMPLEX WITH SRC2-SP3.
5dxb 5DXB CONTAINS THE SAME PROTEIN IN COMPLEX WITH SRC2-SP1.
5dxe 5DXE CONTAINS THE SAME PROTEIN IN COMPLEX WITH SRC2-SP4.
5dxg 5DXG CONTAINS THE SAME PROTEIN IN COMPLEX WITH SRC2-SP5.