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(-) Description

Title :  CRYSTAL STRUCTURE OF ABL1 IN COMPLEX WITH CHMFL-074
 
Authors :  L. L. Kong, C. H. Yun
Date :  27 Jan 16  (Deposition) - 13 Jul 16  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym./Biol. Unit :  A
Keywords :  Abl, Bcr-Abl, Chmfl-074, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. Liu, B. Wang, Q. Wang, Z. Qi, C. Chen, L. L. Kong, J. Y. Chen, X. Liu, A. Wang, C. Hu, W. Wang, H. Wang, F. Wu, Y. Ruan, S. Qi, J. Liu, F. Zou, Z. Hu W. Wang, L. Wang, S. Zhang, C. H. Yun, Z. Zhai, J. Liu, Q. Liu
Discovery And Characterization Of A Novel Potent Type Ii Native And Mutant Bcr-Abl Inhibitor (Chmfl-074) For Chronic Myeloid Leukemia (Cml)
Oncotarget V. 7 45562 2016
PubMed-ID: 27322145  |  Reference-DOI: 10.18632/ONCOTARGET.10037

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE ABL1
    ChainsA
    EC Number2.7.10.2
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System StrainSF9
    Expression System Taxid7108
    FragmentUNP RESIDUES 229-500
    GeneABL1, ABL, JTK7
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric/Biological Unit (3, 15)
No.NameCountTypeFull Name
166K2Ligand/Ion4-[(4-METHYLPIPERAZIN-1-YL)METHYL]-N-(4-METHYL-3-{[1-(PYRIDIN-3-YLCARBONYL)PIPERIDIN-4-YL]OXY}PHENYL)-3-(TRIFLUOROMETHYL)BENZAMIDE
2CL1Ligand/IonCHLORIDE ION
3EDO12Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:270 , LYS A:271 , GLU A:286 , MET A:290 , ILE A:293 , LEU A:298 , VAL A:299 , ILE A:313 , THR A:315 , GLU A:316 , PHE A:317 , MET A:318 , GLY A:321 , ILE A:360 , HIS A:361 , LEU A:370 , VAL A:379 , ALA A:380 , ASP A:381 , PHE A:382 , HOH A:868binding site for residue 66K A 601
02AC2SOFTWAREMET A:226 , PRO A:309 , PHE A:311 , ARG A:386 , LEU A:387 , MET A:388 , ILE A:403 , ALA A:412 , TYR A:449 , GLU A:453 , HOH A:758 , HOH A:760 , HOH A:776binding site for residue 66K A 602
03AC3SOFTWARETYR A:253 , ASN A:322 , ARG A:367 , HIS A:396 , HOH A:857binding site for residue EDO A 603
04AC4SOFTWAREGLU A:238 , ARG A:457 , ARG A:473 , TRP A:476 , GLN A:477binding site for residue EDO A 604
05AC5SOFTWAREMET A:244 , TYR A:257 , TYR A:312binding site for residue EDO A 605
06AC6SOFTWARELYS A:234 , TRP A:235 , MET A:237 , TRP A:261 , LEU A:302 , HOH A:739 , HOH A:784binding site for residue EDO A 606
07AC7SOFTWAREALA A:337 , TYR A:435 , HOH A:711 , HOH A:728binding site for residue EDO A 607
08AC8SOFTWAREASN A:336 , GLU A:494 , HOH A:705 , HOH A:710 , HOH A:736binding site for residue EDO A 608
09AC9SOFTWAREALA A:492binding site for residue EDO A 609
10AD1SOFTWAREILE A:360 , PHE A:416 , SER A:417 , HOH A:805binding site for residue EDO A 610
11AD2SOFTWARETYR A:326 , GLU A:329 , CYS A:330 , EDO A:612 , HOH A:791 , HOH A:895binding site for residue EDO A 611
12AD3SOFTWARETYR A:320 , TYR A:326 , GLU A:334 , ASN A:374 , EDO A:611 , HOH A:815binding site for residue EDO A 612
13AD4SOFTWAREGLN A:498 , HOH A:786 , HOH A:836binding site for residue EDO A 613
14AD5SOFTWAREHOH A:702binding site for residue EDO A 614
15AD6SOFTWARELYS A:274 , GLU A:275 , ASP A:276binding site for residue CL A 615

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HU9)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:309 -Pro A:310

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HU9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HU9)

(-) Exons   (0, 0)

(no "Exon" information available for 5HU9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhh.eeeeee.hhhh...eeeeee.hhheeeeee.......hhhhhhhhhhhhh.........eeeee......eeeee.....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.hhh.eee.................hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hu9 A 225 AMGSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 499
                                   234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384   ||  399       409       419       429       439       449       459       469       479       489       499
                                                                                                                                                                                             388|                                                                                                         
                                                                                                                                                                                              394                                                                                                         

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HU9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HU9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HU9)

(-) Gene Ontology  (125, 125)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ABL1_HUMAN | P005191ab2 1abl 1awo 1bbz 1ju5 1opl 1zzp 2abl 2e2b 2f4j 2fo0 2g1t 2g2f 2g2h 2g2i 2gqg 2hiw 2hyy 2hz0 2hz4 2hzi 2o88 2v7a 3cs9 3eg0 3eg1 3eg2 3eg3 3egu 3k2m 3pyy 3qri 3qrj 3qrk 3t04 3ue4 3uyo 4j9b 4j9c 4j9d 4j9e 4j9f 4j9g 4j9h 4j9i 4jjb 4jjc 4jjd 4twp 4wa9 4xey 4yc8 4zog 5dc0 5dc4 5dc9 5mo4 5oaz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5HU9)