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(-) Description

Title :  FLUORINE SUBSTITUTED 5-METHYL-6-(4'-TRIFLUOROMETHOXYPHENYTHIO) THIENO[2,3-D]PYRIMIDINE-2,4-DIAMINE
 
Authors :  V. Cody
Date :  22 Jan 16  (Deposition) - 25 Jan 17  (Release) - 25 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.46
Chains :  Asym./Biol. Unit :  A
Keywords :  Dihydrofolate Reductase Inhibitor Complex With Nadph, Oxidoreductase- Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. Cody, A. Gangjee
Human Dihydrofolate Reductase Ternary Complex With A Series Of Fluorine Substituted 5-Methyl-6-Phenythio)Thieno[2, 3-D]Pyrimidine-2, 4-Diamines
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DIHYDROFOLATE REDUCTASE
    ChainsA
    EC Number1.5.1.3
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPDS5
    Expression System Taxid562
    GeneDHFR
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
164J1Ligand/Ion5-METHYL-6-{[4-(TRIFLUOROMETHOXY)PHENYL]SULFANYL}THIENO[2,3-D]PYRIMIDINE-2,4-DIAMINE
2NDP1Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:8 , ALA A:9 , ILE A:16 , GLY A:17 , GLY A:20 , ASP A:21 , LEU A:22 , GLY A:53 , LYS A:54 , LYS A:55 , THR A:56 , SER A:59 , LEU A:75 , SER A:76 , ARG A:77 , GLU A:78 , ARG A:91 , SER A:92 , VAL A:115 , GLY A:116 , GLY A:117 , SER A:118 , SER A:119 , VAL A:120 , TYR A:121 , THR A:146 , 64J A:202 , HOH A:302 , HOH A:305 , HOH A:332 , HOH A:338 , HOH A:339 , HOH A:346binding site for residue NDP A 201
2AC2SOFTWAREILE A:7 , VAL A:8 , ALA A:9 , GLU A:30 , PHE A:31 , PHE A:34 , PRO A:61 , ASN A:64 , VAL A:115 , TYR A:121 , THR A:136 , NDP A:201 , HOH A:419binding site for residue 64J A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HQZ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Arg A:65 -Pro A:66
2Gly A:116 -Gly A:117

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HQZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HQZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5HQZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee...eee.........hhhhhhhhhhhhhh......eeeeeeehhhhhhhhhhhh.....eeeee............eee.hhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhh...eeeeeeeee.......ee.........ee...........eee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hqz A   1 VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND 186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HQZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HQZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HQZ)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DYR_HUMAN | P003741boz 1dhf 1dlr 1dls 1drf 1hfp 1hfq 1hfr 1kms 1kmv 1mvs 1mvt 1ohj 1ohk 1pd8 1pd9 1pdb 1s3u 1s3v 1s3w 1u71 1u72 1yho 2c2s 2c2t 2dhf 2w3a 2w3b 2w3m 3eig 3f8y 3f8z 3f91 3fs6 3ghc 3ghv 3ghw 3gi2 3gyf 3l3r 3n0h 3ntz 3nu0 3nxo 3nxr 3nxt 3nxv 3nxx 3nxy 3nzd 3oaf 3s3v 3s7a 4ddr 4g95 4kak 4kbn 4kd7 4keb 4kfj 4m6j 4m6k 4m6l 4qhv 4qjc 5hpb 5hqy 5hsr 5hsu 5ht4 5ht5 5hui 5hvb 5hve

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5HQZ)