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(-) Description

Title :  STRUCTURE OF DISULFIDE FORMED ABFR
 
Authors :  G. Liu, X. Liu, J. Gan, C. -G. Yang
Date :  15 Jan 16  (Deposition) - 25 Jan 17  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Disulfide, Transcription Factor, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Liu, X. Liu, H. Xu, X. Liu, H. Zhou, Z. Huang, J. Gan, H. Chen, L. Lan, C. G. Yang
Structural Insights Into The Redox-Sensing Mechanism Of Marr-Type Regulator Abfr.
J. Am. Chem. Soc. V. 139 1598 2017
PubMed-ID: 28086264  |  Reference-DOI: 10.1021/JACS.6B11438

(-) Compounds

Molecule 1 - MARR FAMILY TRANSCRIPTIONAL REGULATOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ADT70_02765
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS EPIDERMIDIS
    Organism Taxid: 1282

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2CU2Ligand/IonCOPPER (II) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:-2 , SER A:-1 , ASN A:0 , HOH A:395binding site for residue CU A 201
2AC2SOFTWAREGLN B:-2 , SER B:-1 , CL B:202binding site for residue CU B 201
3AC3SOFTWAREGLN B:-2 , ASN B:0 , CU B:201 , HOH B:320binding site for residue CL B 202

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:13 -B:116
2A:116 -B:13

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asn A:51 -Pro A:52
2Asn B:51 -Pro B:52

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HLI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HLI)

(-) Exons   (0, 0)

(no "Exon" information available for 5HLI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..eehhhhhhhhh.hhhhhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hli A  -2 QSNMKQEQMRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQYLVLLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAISSCLPDTTEYDETKYVFEELEQTLKHLIEK 146
                                     7        17        27        37        47        57        67        77        87        97       107       117||     130       140      
                                                                                                                                                  118|                        
                                                                                                                                                   122                        


Chain B from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..eehhhhhhhhh.hhhhhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hli B  -2 QSNMKQEQMRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQYLVLLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAISSCLPQVFEELEQTLKHLIE 145
                                     7        17        27        37        47        57        67        77        87        97       107       117 ||    139      
                                                                                                                                                   119|             
                                                                                                                                                    132
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HLI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HLI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HLI)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5HKZ1_STAEQ | Q5HKZ1: 4hbl 5hlg 5hlh

(-) Related Entries Specified in the PDB File

5hlg 5hlh