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(-)Asym./Biol. Unit
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(-) Description

Title :  BACTERIAL SODIUM CHANNEL NECK 3G MUTANT, SAD
 
Authors :  A. Rohaim, D. L. Minor
Date :  13 Jan 16  (Deposition) - 09 Mar 16  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  5.50
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Bacterial Voltage Gated Sodium Channel, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Arrigoni, A. Rohaim, D. Shaya, F. Findeisen, R. A. Stein, S. R. Nurva S. Mishra, H. S. Mchaourab, D. L. Minor
Unfolding Of A Temperature-Sensitive Domain Controls Voltage-Gated Channel Activation.
Cell V. 164 922 2016
PubMed-ID: 26919429  |  Reference-DOI: 10.1016/J.CELL.2016.02.001

(-) Compounds

Molecule 1 - ION TRANSPORT PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 143-288
    Gene: MLG_0322
    Mutation: YES
    Organism Scientific: ALKALILIMNICOLA EHRLICHII
    Organism Taxid: 351052
    Synonym: SODIUM CHANNEL

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric/Biological Unit (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5HK6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HK6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HK6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HK6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HK6)

(-) Exons   (0, 0)

(no "Exon" information available for 5HK6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhh.......hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.....hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hk6 A 149 GIAWIALLLLVIFYVFAVmGTKLFAQSFPEWFGTLGASmYTLFQVmTLESWSmGIARPVIEAYPWAWIYFVSFILVSSFTVLNLFIGIIIESmQIEQEQRAHDERLEmLQLIRDLSSKVDRLERR 284
                                   158       168       178       188     | 198  |    208       218       228       238  |||  259       269       279     
                                            167-MSE             187-MSE  |      |                                     241-MSE        267-MSE             
                                                                       194-MSE  |                                      242|                              
                                                                              201-MSE                                   254                              


Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhh.......hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 5hk6 B 153 IALLLLVIFYVFAVmGTKLFAQSFPEWFGTLGASmYTLFQVmTLESWSmGIARPVIEAYPWAWIYFVSFILVSSFTVLNLFIGIIIESmQQEQRAHDERLEmLQLIRDLSSKVD 279
                                   162    |  172       182    |  192 |     202       212       222       232       242|      265 |     275    
                                        167-MSE             187-MSE  |      |                                     241-MSE      267-MSE        
                                                                   194-MSE  |                                      242|                       
                                                                          201-MSE                                   256                       


Chain C from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhh.......hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hk6 C 153 IALLLLVIFYVFAVmGTKLFAQSFPEWFGTLGASmYTLFQVmTLESWSmGIARPVIEAYPWAWIYFVSFILVSSFTVLNLFIGIIIESmQSIEQEQRAHDERLEmLQLIRDLSSKVDRLERRSG 286
                                   162    |  172       182    |  192 |     202       212       222       232       242||     262    |  272       282    
                                        167-MSE             187-MSE  |      |                                     241-MSE         267-MSE               
                                                                   194-MSE  |                                       243|                                
                                                                          201-MSE                                    254                                


Chain D from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhh.......hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hk6 D 153 IALLLLVIFYVFAVmGTKLFAQSFPEWFGTLGASmYTLFQVmTLESWSmGIARPVIEAYPWAWIYFVSFILVSSFTVLNLFIGIIIESmQIEQEQRAHDERLEmLQLIRDLSSKVDRLERRSG 286
                                   162    |  172       182    |  192 |     202       212       222       232       242|      263   |   273       283   
                                        167-MSE             187-MSE  |      |                                     241-MSE        267-MSE               
                                                                   194-MSE  |                                      242|                                
                                                                          201-MSE                                   254
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HK6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HK6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HK6)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q0ABW0_ALKEH | Q0ABW0: 4lto 4ltp 4ltq 4ltr 5hj8 5hk7 5hkd 5iwn 5iwo

(-) Related Entries Specified in the PDB File

5hj8 5hk7 5hkd 5hkt 5hku