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(-) Description

Title :  ASPARTATE TRANSCARBAMOYLASE DOMAIN OF HUMAN CAD BOUND TO PALA
 
Authors :  A. Ruiz-Ramos, A. Grande-Garcia, M. D. Moreno-Morcillo, S. Ramon-Mai
Date :  29 Mar 16  (Deposition) - 22 Jun 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  D,E,F  (1x)
Biol. Unit 2:  A,B,C  (1x)
Keywords :  Transferase, De Novo Pyrimidine Synthesis, Transcarbamoylase, Transcarbamylase, Cad, Carbamoyl Phosphate Synthetase, Dihydroorotase, Cooperativity (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Ruiz-Ramos, A. Velazquez-Campoy, A. Grande-Garcia, M. Moreno-Morcillo, S. Ramon-Maiques
Structure And Functional Characterization Of Human Aspartate Transcarbamoylase, The Target Of The Anti-Tumoral Drug Pala.
Structure V. 24 1081 2016
PubMed-ID: 27265852  |  Reference-DOI: 10.1016/J.STR.2016.05.001
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CAD PROTEIN
    ChainsA, B, C, D, E, F
    EC Number3.5.2.3, 2.1.3.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPOPIN-M
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantPLYSS
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsHUMAN CDNA PURCHASED FROM OPENBIOSYSTEMS ( CLONE ID 5 551082)
    SynonymASPARTATE TRANSCARBAMOYLASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)   DEF
Biological Unit 2 (1x)ABC   

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2PAL6Ligand/IonN-(PHOSPHONACETYL)-L-ASPARTIC ACID
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2PAL3Ligand/IonN-(PHOSPHONACETYL)-L-ASPARTIC ACID
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2PAL3Ligand/IonN-(PHOSPHONACETYL)-L-ASPARTIC ACID

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:1973 , THR A:1974 , ARG A:1975 , THR A:1976 , ARG A:2024 , HIS A:2052 , GLN A:2055 , ARG A:2085 , ARG A:2146 , GLN A:2148 , MET A:2185 , PRO A:2186 , HOH A:3044 , SER B:2000 , LYS B:2003BINDING SITE FOR RESIDUE PAL A3226
2AC2SOFTWARESER A:2000 , LYS A:2003 , SER C:1973 , THR C:1974 , ARG C:1975 , THR C:1976 , ARG C:2024 , HIS C:2052 , GLN C:2055 , ARG C:2085 , THR C:2086 , ARG C:2146 , GLN C:2148 , MET C:2185 , HOH C:3032 , HOH C:3048BINDING SITE FOR RESIDUE PAL C3226
3AC3SOFTWARESER B:1973 , THR B:1974 , ARG B:1975 , THR B:1976 , ARG B:2024 , HIS B:2052 , GLN B:2055 , ARG B:2085 , THR B:2086 , ARG B:2146 , GLN B:2148 , MET B:2185 , HOH B:3047 , SER C:2000 , LYS C:2003BINDING SITE FOR RESIDUE PAL B3226
4AC4SOFTWARESER D:1973 , THR D:1974 , ARG D:1975 , THR D:1976 , ARG D:2024 , HIS D:2052 , ARG D:2085 , THR D:2086 , ARG D:2146 , GLN D:2148 , MET D:2185 , HOH D:3058 , SER E:2000 , LYS E:2003BINDING SITE FOR RESIDUE PAL D3226
5AC5SOFTWARESER E:1973 , THR E:1974 , ARG E:1975 , THR E:1976 , ARG E:2024 , HIS E:2052 , ARG E:2085 , ARG E:2146 , GLN E:2148 , MET E:2185 , HOH E:3054 , HOH E:3055 , SER F:2000 , LYS F:2003BINDING SITE FOR RESIDUE PAL E3226
6AC6SOFTWARESER D:2000 , LYS D:2003 , SER F:1973 , THR F:1974 , ARG F:1975 , THR F:1976 , ARG F:2024 , HIS F:2052 , ARG F:2085 , ARG F:2146 , GLN F:2148 , MET F:2185 , HOH F:3041 , HOH F:3042BINDING SITE FOR RESIDUE PAL F3226
7AC7SOFTWAREARG F:2040BINDING SITE FOR RESIDUE EDO F3227
8AC8SOFTWAREHIS D:1925BINDING SITE FOR RESIDUE EDO D3227

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5G1N)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Met A:2185 -Pro A:2186
2Met B:2185 -Pro B:2186
3Met C:2185 -Pro C:2186
4Met D:2185 -Pro D:2186
5Gly E:2153 -Ser E:2154
6Met E:2185 -Pro E:2186
7Met F:2185 -Pro F:2186

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G1N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G1N)

(-) Exons   (0, 0)

(no "Exon" information available for 5G1N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:306
                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhh.hhhhhhhhhh....eeeeee...hhhhhhhh.....eeeeee....hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhh....eeeee.......hhhhhhhhhhh...eeee.hhhhhh....eeee...hhhhh.hhhhhhhh......hhhhhh......eee.........hhhhh.....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5g1n A 1920 SLVGQHILSVQQFTKDQMSHLFNVAHTLRMMVQKERSLDILKGKVMASMFYEVSTRTSSSFAAAMARLGGAVLSFSEATSSVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASRGTKQEEFESIEEALPDTDVLYMTRIQKERFGSTQEYEACFGQFILTPHIMTRAKKKMVVMHPMPRVNEISVEVDSDPRAAYFRQAENGMYIRMALLATVLGRF 2225
                                  1929      1939      1949      1959      1969      1979      1989      1999      2009      2019      2029      2039      2049      2059      2069      2079      2089      2099      2109      2119      2129      2139      2149      2159      2169      2179      2189      2199      2209      2219      

Chain B from PDB  Type:PROTEIN  Length:306
                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhh.hhhhhhhhhhhhh.eeeeee...hhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhh.eeeeee.......hhhhhhhhhhh..eeee..hhhhhh....eeee...hhhhh.hhhhhhh.......hhhhhh......eee.........hhhhhhh...hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5g1n B 1920 SLVGQHILSVQQFTKDQMSHLFNVAHTLRMMVQKERSLDILKGKVMASMFYEVSTRTSSSFAAAMARLGGAVLSFSEATSSVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASRGTKQEEFESIEEALPDTDVLYMTRIQKERFGSTQEYEACFGQFILTPHIMTRAKKKMVVMHPMPRVNEISVEVDSDPRAAYFRQAENGMYIRMALLATVLGRF 2225
                                  1929      1939      1949      1959      1969      1979      1989      1999      2009      2019      2029      2039      2049      2059      2069      2079      2089      2099      2109      2119      2129      2139      2149      2159      2169      2179      2189      2199      2209      2219      

Chain C from PDB  Type:PROTEIN  Length:306
                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee....hhhhhhhhhhhhh...eeeeee.hhhhhhhh.hhhhhhhhhh....eeeeee...hhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhh....eeeeee.hhhhh.hhhhhhhhhhhh..eeee.hhhhhh....eeee...hhhhh.hhhhhhhhh.....hhhhhh......eee.........hhhhhhh...hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5g1n C 1920 SLVGQHILSVQQFTKDQMSHLFNVAHTLRMMVQKERSLDILKGKVMASMFYEVSTRTSSSFAAAMARLGGAVLSFSEATSSVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASRGTKQEEFESIEEALPDTDVLYMTRIQKERFGSTQEYEACFGQFILTPHIMTRAKKKMVVMHPMPRVNEISVEVDSDPRAAYFRQAENGMYIRMALLATVLGRF 2225
                                  1929      1939      1949      1959      1969      1979      1989      1999      2009      2019      2029      2039      2049      2059      2069      2079      2089      2099      2109      2119      2129      2139      2149      2159      2169      2179      2189      2199      2209      2219      

Chain D from PDB  Type:PROTEIN  Length:306
                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee....hhhhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhhh.eeeeee...hhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhh...eeeeee.hhhhh.hhhhhhhhhhhh.eeee..hhhhhhhhh.eeee...hhhhh.hhhhhhhhh.....hhhhhhh.....eee.........hhhhhhh...hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5g1n D 1920 SLVGQHILSVQQFTKDQMSHLFNVAHTLRMMVQKERSLDILKGKVMASMFYEVSTRTSSSFAAAMARLGGAVLSFSEATSSVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASRGTKQEEFESIEEALPDTDVLYMTRIQKERFGSTQEYEACFGQFILTPHIMTRAKKKMVVMHPMPRVNEISVEVDSDPRAAYFRQAENGMYIRMALLATVLGRF 2225
                                  1929      1939      1949      1959      1969      1979      1989      1999      2009      2019      2029      2039      2049      2059      2069      2079      2089      2099      2109      2119      2129      2139      2149      2159      2169      2179      2189      2199      2209      2219      

Chain E from PDB  Type:PROTEIN  Length:307
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhhhh..........eeeeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhh.hhhhhhhhhhhhh.eeeeee...hhhhhhhh.....eeeeee....hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhh....eeeee.hhhhh.hhhhhhhhhhhh..ee...hhhhhh....eeee...hhhhh.hhhhhhhhh.....hhhhhh......eee.........hhhhh.....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5g1n E 1919 HSLVGQHILSVQQFTKDQMSHLFNVAHTLRMMVQKERSLDILKGKVMASMFYEVSTRTSSSFAAAMARLGGAVLSFSEATSSVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASRGTKQEEFESIEEALPDTDVLYMTRIQKERFGSTQEYEACFGQFILTPHIMTRAKKKMVVMHPMPRVNEISVEVDSDPRAAYFRQAENGMYIRMALLATVLGRF 2225
                                  1928      1938      1948      1958      1968      1978      1988      1998      2008      2018      2028      2038      2048      2058      2068      2078      2088      2098      2108      2118      2128      2138      2148      2158      2168      2178      2188      2198      2208      2218       

Chain F from PDB  Type:PROTEIN  Length:306
                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee....hhhhhhhhhhhhhh..eeeeee...hhhhhh.hhhhhhhhhhhhh.eeeeee...hhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhh.eeeeee.hhhhh.hhhhhhhhhhh...eeee.hhhhhhhhh.eee..........hhhhhhhhh.......hhhhh.....eee.........hhhhhhh...hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5g1n F 1920 SLVGQHILSVQQFTKDQMSHLFNVAHTLRMMVQKERSLDILKGKVMASMFYEVSTRTSSSFAAAMARLGGAVLSFSEATSSVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASRGTKQEEFESIEEALPDTDVLYMTRIQKERFGSTQEYEACFGQFILTPHIMTRAKKKMVVMHPMPRVNEISVEVDSDPRAAYFRQAENGMYIRMALLATVLGRF 2225
                                  1929      1939      1949      1959      1969      1979      1989      1999      2009      2019      2029      2039      2049      2059      2069      2079      2089      2099      2109      2119      2129      2139      2149      2159      2169      2179      2189      2199      2209      2219      

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G1N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G1N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G1N)

(-) Gene Ontology  (56, 56)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PYR1_HUMAN | P277084by3 4c6b 4c6c 4c6d 4c6e 4c6f 4c6i 4c6j 4c6k 4c6l 4c6m 4c6n 4c6o 4c6p 4c6q 5g1o 5g1p

(-) Related Entries Specified in the PDB File

5g1o ASPARTATE TRANSCARBAMOYLASE DOMAIN OF HUMAN CAD IN APO FORM
5g1p ASPARTATE TRANSCARBAMOYLASE DOMAIN OF HUMAN CAD BOUND TO CARBAMOYL PHOSPHATE