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(-) Description

Title :  CRYPTIC TIR
 
Authors :  S. Halabi, N. J. Gay, M. C. Moncrieffe
Date :  25 Nov 15  (Deposition) - 07 Dec 16  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Cell Cycle, Tir, Immume Response (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Halabi, E. Sekine, B. Verstak, N. J. Gay, M. C. Moncrieffe
Structure Of The Toll/Interleukin-1 Receptor (Tir) Domain O The B-Cell Adaptor That Links Phosphoinositide Metabolism With The Negative Regulation Of The Toll-Like Receptor (Tlr Signalosome.
J. Biol. Chem. V. 292 652 2017
PubMed-ID: 27909057  |  Reference-DOI: 10.1074/JBC.M116.761528

(-) Compounds

Molecule 1 - PHOSPHOINOSITIDE 3-KINASE ADAPTER PROTEIN 1
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG7
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentTIR DOMAIN, RESIDUES 7-142
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymB-CELL ADAPTER FOR PHOSPHOINOSITIDE 3-KINASE, B-CELL PHOSPHOINOSITIDE 3-KINASE ADAPTER PROTEIN 1, B CELL ADAPTOR FOR PHOSPHOINOSITIDE 3-KINASE, BCAP

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2I3C1Ligand/Ion5-AMINO-2,4,6-TRIIODOBENZENE-1,3-DICARBOXYLIC ACID
3MLY3Mod. Amino AcidN-DIMETHYL-LYSINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:19 , TRP A:20 , TYR A:23 , ARG A:103 , GLU A:107 , PHE A:108 , HOH A:2014BINDING SITE FOR RESIDUE 1PE A 1140
2AC2SOFTWARELEU A:27 , SER A:30 , SER A:31 , GLN A:33 , VAL A:131 , HOH A:2005BINDING SITE FOR RESIDUE I3C A 1141

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FOR)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly A:6 -Cys A:7
2Gly A:45 -Pro A:46
3His A:90 -Pro A:91

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FOR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FOR)

(-) Exons   (0, 0)

(no "Exon" information available for 5FOR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeehhhhhhhhhhhhhhhhhh.......eeeee.......hhhhhhhhhhh.eeeeeehhhhhhhhh...hhhhhhhhh.hhh.eeeee.....hhhhhhh..hhhhheee....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5for A   6 GCDILIVYSPDAEEWCQYLQTLFLSSRQVRSQkILTHRLGPEASFSAEDLSLFLSTRCVVVLLSAELVQHFHkPSLLPLLQRAFHPPHRVVRLLCGVRDSEEFLDFFPDWAHWQELTCDDEPETYVAAVKkAIS 139
                                    15        25        35  |     45        55        65        75  |     85        95       105       115       125       135|   
                                                           38-MLY                                  78-MLY                                                   136-MLY

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FOR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FOR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FOR)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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