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(-) Description

Title :  SMALL-MOLECULE STABILIZATION OF THE 14-3-3/GAB2 PPI INTERFACE
 
Authors :  D. Bier, C. Ottmann
Date :  23 Nov 15  (Deposition) - 04 May 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  14-3-3, Gab2, Protein, Diphosphorylation, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Bier, M. Bartel, K. Sies, S. Halbach, Y. Higuchi, Y. Haranosono, T. Brummer, N. Kato, C. Ottmann
Small-Molecule Stabilization Of The 14-3-3/Gab2 Protein-Protein Interaction (Ppi) Interface.
Chemmedchem V. 11 911 2016
PubMed-ID: 26644359  |  Reference-DOI: 10.1002/CMDC.201500484

(-) Compounds

Molecule 1 - 14-3-3 PROTEIN ZETA/DELTA
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneYWHAZ
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPROTEIN KINASE C INHIBITOR PROTEIN 1,KCIP-1
 
Molecule 2 - GRB2-ASSOCIATED-BINDING PROTEIN 2
    ChainsC
    EngineeredYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGRB2-ASSOCIATED BINDER 2,GROWTH FACTOR RECEPTOR BOUND PROTEIN 2-ASSOCIATED PROTEIN 2,PP100
    SyntheticYES
 
Molecule 3 - GRB2-ASSOCIATED-BINDING PROTEIN 2
    ChainsD
    EngineeredYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGRB2-ASSOCIATED BINDER 2,GROWTH FACTOR RECEPTOR BOUND PROTEIN 2-ASSOCIATED PROTEIN 2,PP100
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1BEZ2Ligand/IonBENZOIC ACID
2SEP1Mod. Amino AcidPHOSPHOSERINE
3TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
02AC2SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
03AC3SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
04AC4SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
05AC5SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
06AC6SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
07AC7SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
08AC8SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
09AC9SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
10AD1SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
11AD2SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
12AD3SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
13AD4SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
14AD5SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
15AD6SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
16AD7SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
17AD8SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301
18AD9SOFTWAREARG A:222 , ARG B:222binding site for residues BEZ A 301 and BEZ B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EWZ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu C:392 -Pro C:393

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EWZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EWZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5EWZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ewz A   2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS 230
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221         

Chain B from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ewz B   1 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS 230
                                    10        20        30        40        50        60        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       
                                                                                               69|                                                                                                                                                             
                                                                                                73                                                                                                                                                             

Chain C from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5ewz C 387 PRRNtLPAM 395
                                |    
                              391-TPO

Chain D from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 5ewz D 207 RSAsFS 212
                               |  
                             210-SEP

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EWZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EWZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EWZ)

(-) Gene Ontology  (38, 41)

Asymmetric/Biological Unit(hide GO term definitions)

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    Leu C:392 - Pro C:393   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        1433Z_HUMAN | P631041ib1 1qja 1qjb 2c1j 2c1n 2o02 2wh0 3cu8 3nkx 3rdh 4bg6 4fj3 4hkc 4ihl 4n7g 4n7y 4n84 4wrq 4zdr 5d2d 5d3f 5exa 5j31 5jit 5jiv 5jm4 5nas 5wxn
        GAB2_HUMAN | Q9UQC22vwf 2w0z 5exa

(-) Related Entries Specified in the PDB File

4fj3 4ihl 4n7g