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(-) Description

Title :  CRYSTAL STRUCTURE OF C9ORF72 ANTISENSE CCCCGG REPEAT RNA ASSOCIATED WITH LOU GEHRIG'S DISEASE AND FRONTOTEMPORAL DEMENTIA, CRYSTALLIZED WITH SR2+
 
Authors :  D. R. Tomchick, D. W. Dodd, K. T. Gagnon, D. R. Corey
Date :  20 Nov 15  (Deposition) - 24 Feb 16  (Release) - 16 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.47
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Repeat Expansion Disorder, Genetic Disease, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. W. Dodd, D. R. Tomchick, D. R. Corey, K. T. Gagnon
Pathogenic C9Orf72 Antisense Repeat Rna Forms A Double Heli With Tandem C:C Mismatches.
Biochemistry V. 55 1283 2016
PubMed-ID: 26878348  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00136

(-) Compounds

Molecule 1 - RNA (5'- R(*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*GP*GP*CP*CP*CP*C)- 3')
    ChainsA, B
    EngineeredYES
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2K9Ligand/IonPOTASSIUM ION
3MG2Ligand/IonMAGNESIUM ION
4SR1Ligand/IonSTRONTIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREG A:5 , HOH A:204 , HOH A:211 , HOH A:225 , HOH A:231 , HOH A:252 , HOH A:276binding site for residue K A 101
02AC2SOFTWAREG A:17 , G A:18 , HOH A:243 , G B:18binding site for residue K A 102
03AC3SOFTWAREHOH A:248 , HOH A:268 , C B:10 , C B:16 , HOH B:211 , HOH B:235 , HOH B:241 , HOH B:257binding site for residue SR B 101
04AC4SOFTWAREC A:10 , C B:10 , C B:16 , HOH B:235binding site for residue MG B 102
05AC5SOFTWAREC B:9 , C B:10 , HOH B:208 , HOH B:276 , HOH B:278binding site for residue MG B 103
06AC6SOFTWAREHOH A:216 , C B:16 , G B:17 , HOH B:214 , HOH B:243 , HOH B:249 , HOH B:273binding site for residue K B 104
07AC7SOFTWAREHOH A:255 , HOH A:270 , HOH A:272 , HOH B:251 , HOH B:253 , HOH B:272 , HOH B:279 , HOH B:281binding site for residue K B 105
08AC8SOFTWAREG B:5 , CL B:111 , HOH B:217 , HOH B:223 , HOH B:224 , HOH B:236 , HOH B:280binding site for residue K B 106
09AC9SOFTWAREHOH A:270 , G B:17 , G B:18 , HOH B:213 , HOH B:229 , HOH B:277binding site for residue K B 107
10AD1SOFTWAREG B:17 , HOH B:213 , HOH B:215 , HOH B:228 , HOH B:231 , HOH B:275 , HOH B:277binding site for residue K B 108
11AD2SOFTWAREHOH B:208 , HOH B:212 , HOH B:247binding site for residue K B 109
12AD3SOFTWAREG B:5 , G B:6 , K B:106 , HOH B:224 , HOH B:274 , HOH B:280binding site for residue CL B 111

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EW4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EW4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5EW4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA/RNA  Length:20
                                                   
                  5ew4 A  2 CCCGGCCCCGGCCCCGGCCC 21
                                    11        21

Chain B from PDB  Type:DNA/RNA  Length:21
                                                    
                  5ew4 B  1 CCCCGGCCCCGGCCCCGGCCC 21
                                    10        20 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EW4)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

5ew7