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(-) Description

Title :  RAT PRESTIN STAS DOMAIN IN COMPLEX WITH THIOCYANATE
 
Authors :  G. Lolli, E. Pasqualetto, E. Costanzi, G. Bonetto, R. Battistutta
Date :  19 Nov 15  (Deposition) - 16 Dec 15  (Release) - 17 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym./Biol. Unit :  A
Keywords :  Anion-Binding Site, Protein-Anion Complex, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Lolli, E. Pasqualetto, E. Costanzi, G. Bonetto, R. Battistutta
The Stas Domain Of Mammalian Slc26A5 Prestin Harbours An Anion-Binding Site.
Biochem. J. V. 473 365 2016
PubMed-ID: 26635354  |  Reference-DOI: 10.1042/BJ20151089
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PRESTIN,PRESTIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET SUMO
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: STAS DOMAIN,STAS DOMAIN
    Gene: SLC26A5, PRES
    Mutation: YES
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Other Details: RESIDUES 564-636 (VARIABLE LOOP) ARE DELETED, GLYSER ARE INSERTED BETWEEN POSITION 563 AND 637
    Synonym: SOLUTE CARRIER FAMILY 26 MEMBER 5,SOLUTE CARRIER FAMILY 26 MEMBER 5

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3PG41Ligand/IonTETRAETHYLENE GLYCOL
4SCN1Ligand/IonTHIOCYANATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:544 , MET A:652 , ASP A:653 , GLY A:656 , GLN A:714binding site for residue SCN A 801
2AC2SOFTWARETYR A:552 , LYS A:699binding site for residue PEG A 802
3AC3SOFTWAREGLY A:668 , TYR A:673 , ALA A:697 , HIS A:704 , ALA A:718 , HOH A:919binding site for residue PG4 A 803
4AC4SOFTWAREGLN A:513 , VAL A:710binding site for residue EDO A 804
5AC5SOFTWARETYR A:508 , LYS A:536binding site for residue EDO A 805
6AC6SOFTWARETHR A:517 , ASP A:518 , ALA A:525 , HOH A:920binding site for residue EDO A 806

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EUX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EUX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EUX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EUX)

(-) Exons   (0, 0)

(no "Exon" information available for 5EUX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee......eee............eeeeee..hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh....hhhhhh.ee.hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eux A 506 PSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSNIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQVREA 718
                                   515       525       535       545       639       649       659       669       679       689       699       709         
                                                                         553|                                                                                
                                                                          638
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EUX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EUX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EUX)

(-) Gene Ontology  (42, 42)

Asymmetric/Biological Unit(hide GO term definitions)

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  5eux
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  S26A5_RAT | Q9EPH0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        S26A5_RAT | Q9EPH0: 3llo 5eus 5euu 5euw 5euz

(-) Related Entries Specified in the PDB File

3llo 3LLO CONTAINS THE SAME PROTEIN IN THE APO FORM
5eus 5EUS CONTAINS THE SAME PROTEIN IN COMPLEX WITH BROMIDE
5euu 5EUU CONTAINS THE SAME PROTEIN IN COMPLEX WITH CHLORIDE
5euw 5EUW CONTAINS THE SAME PROTEIN IN COMPLEX WITH NITRATE