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(-) Description

Title :  RAT PRESTIN STAS DOMAIN IN COMPLEX WITH CHLORIDE
 
Authors :  G. Lolli, E. Pasqualetto, E. Costanzi, G. Bonetto, R. Battistutta
Date :  19 Nov 15  (Deposition) - 16 Dec 15  (Release) - 17 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.87
Chains :  Asym./Biol. Unit :  A
Keywords :  Anion-Binding Site, Protein-Anion Complex, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Lolli, E. Pasqualetto, E. Costanzi, G. Bonetto, R. Battistutta
The Stas Domain Of Mammalian Slc26A5 Prestin Harbours An Anion-Binding Site.
Biochem. J. V. 473 365 2016
PubMed-ID: 26635354  |  Reference-DOI: 10.1042/BJ20151089
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PRESTIN,PRESTIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET SUMO
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: STAS DOMAIN,STAS DOMAIN,STAS DOMAIN,STAS DOMAIN
    Gene: SLC26A5, PRES
    Mutation: YES
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Other Details: RESIDUES 564-636 (VARIABLE LOOP) ARE DELETED, GLYSER ARE INSERTED BETWEEN POSITION 563 AND 637
    Synonym: SOLUTE CARRIER FAMILY 26 MEMBER 5,SOLUTE CARRIER FAMILY 26 MEMBER 5

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3PG41Ligand/IonTETRAETHYLENE GLYCOL
4PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:652 , ASP A:653 , GLY A:656 , GLN A:714 , HOH A:929 , HOH A:949binding site for residue CL A 801
2AC2SOFTWAREILE A:706binding site for residue CL A 802
3AC3SOFTWAREGLN A:513binding site for residue EDO A 803
4AC4SOFTWAREVAL A:684 , THR A:688 , LYS A:699 , HOH A:919binding site for residue EDO A 804
5AC5SOFTWAREGLU A:666binding site for residue EDO A 805
6AC6SOFTWAREGLY A:668 , TYR A:673 , ALA A:697 , GLU A:700 , LEU A:701 , HIS A:704 , ALA A:718 , HOH A:901binding site for residue PG4 A 806
7AC7SOFTWAREPRO A:506 , ALA A:542 , ASN A:695binding site for residue PGE A 807

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EUU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EUU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EUU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EUU)

(-) Exons   (0, 0)

(no "Exon" information available for 5EUU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee......eee............eeeeee..hhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh....hhhhhh.ee.hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5euu A 505 SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYNIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQVREA 718
                                   514       524       534       544       639       649       659       669       679       689       699       709         
                                                                         552|                                                                                
                                                                          638
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EUU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EUU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EUU)

(-) Gene Ontology  (42, 42)

Asymmetric/Biological Unit(hide GO term definitions)

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  5euu
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  S26A5_RAT | Q9EPH0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        S26A5_RAT | Q9EPH0: 3llo 5eus 5euw 5eux 5euz

(-) Related Entries Specified in the PDB File

3llo 3LLO CONTAINS THE SAME PROTEIN IN THE APO FORM
5eus 5EUS CONTAINS THE SAME PROTEIN IN COMPLEX WITH BROMIDE