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(-) Description

Title :  HUMAN MUSCLE FRUCTOSE-1,6-BISPHOSPHATASE IN INACTIVE T-STATE IN COMPLEX WITH AMP
 
Authors :  J. Barciszewski, J. Wisniewski, R. Kolodziejczyk, A. Dzugaj, M. Jasko D. Rakus
Date :  17 Nov 15  (Deposition) - 13 Apr 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  C,D  (2x)
Keywords :  Hydrolase, Carbohydrate Metabolism, Glyconeogenesis, Muscle, Fbpase, T-State, Amp (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Barciszewski, J. Wisniewski, R. Kolodziejczyk, M. Jaskolski, D. Rakus, A. Dzugaj
T-To-R Switch Of Muscle Fructose-1, 6-Bisphosphatase Involve Fundamental Changes Of Secondary And Quaternary Structure.
Acta Crystallogr D Struct V. 72 536 2016 Biol
PubMed-ID: 27050133  |  Reference-DOI: 10.1107/S2059798316001765
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FRUCTOSE-1,6-BISPHOSPHATASE ISOZYME 2
    ChainsA, C, B, D
    EC Number3.1.3.11
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPKK223-3
    Expression System StrainC100
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneFBP2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymFBPASE 2,D-FRUCTOSE-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE 2, MUSCLE FBPASE
    TissueSKELETAL MUSCLE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (2x)AB  
Biological Unit 2 (2x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:17 , LYS A:20 , GLY A:21 , ALA A:24 , THR A:27 , GLY A:28 , GLU A:29 , LEU A:30 , THR A:31 , LYS A:112 , TYR A:113 , VAL A:160 , THR A:177 , HOH A:520 , HOH A:542 , HOH A:601 , HOH A:616 , HOH A:638binding site for residue AMP A 401
2AC2SOFTWAREVAL C:17 , LYS C:20 , GLY C:21 , ALA C:24 , THR C:27 , GLY C:28 , GLU C:29 , LEU C:30 , THR C:31 , LYS C:112 , TYR C:113 , ARG C:140 , VAL C:160 , THR C:177 , HOH C:520 , HOH C:580 , HOH C:584 , HOH C:637binding site for residue AMP C 401
3AC3SOFTWAREVAL B:17 , LYS B:20 , GLY B:21 , ALA B:24 , GLY B:26 , THR B:27 , GLY B:28 , GLU B:29 , LEU B:30 , THR B:31 , LYS B:112 , TYR B:113 , VAL B:160 , THR B:177 , HOH B:532 , HOH B:543 , HOH B:548 , HOH B:561 , HOH B:605binding site for residue AMP B 401
4AC4SOFTWAREVAL D:17 , LYS D:20 , GLY D:21 , ALA D:24 , GLY D:26 , THR D:27 , GLY D:28 , GLU D:29 , LEU D:30 , THR D:31 , LYS D:112 , TYR D:113 , VAL D:160 , THR D:177 , HOH D:518 , HOH D:520 , HOH D:547 , HOH D:585 , HOH D:587binding site for residue AMP D 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ET6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5ET6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ET6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ET6)

(-) Exons   (0, 0)

(no "Exon" information available for 5ET6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:320
                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhh.......hhhhhhhhhhhhhhhhh...eeeeee......ee.hhh.eeeeeeeeeeeehhhhhhhh..eeeeeeeee....hhhhhh.hhhhh.eeeeeee...eeeeee.....eeeeee....eeeeee..........eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5et6 A   8 TDMLTLTRYVMEKGRQAKGTGELTQLLNSMLTAIKAISSAVRKAGLAHLYGIAGSVVKKLDVLSNSLVINMLQSSYSTCVLVSEENKDAIITAKEKRGKYVVCFDPLDGSSNIDCLASIGTIFAIYRKTEPSEKDALQCGRNIVAAGYALYGSATLVALSTGQGVDLFMLDPALGEFVLVEKDVKIKKKGKIYSLNEGYAKYFDAATTEYVQKKKFPEDGSAPYGARYVGSMVADVHRTLVYGGIFLYPANQKSPKGKLRLLYECNPVAYIIEQAGGLATTGTQPVLDVKPEAIHQRVPLILGSPEDVQEYLTCVQKNQA 336
                                    17        27        37        47        57     || 73        83        93       103       113       123       133       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336
                                                                                  63|                                                                     142|                                                                                                                                                                                              
                                                                                   70                                                                      146                                                                                                                                                                                              

Chain B from PDB  Type:PROTEIN  Length:315
                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhh.......hhhhhhhhhhhhhhhh...eeeeee......ee.hhh.eeeeeeeeeeeehhhhhhhh..eeeeeeeee...hhhhhh.hhhhh.eeeeeee...eeeeee....eeeeeee....eeeeeeeee.......eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5et6 B   9 DMLTLTRYVMEKGRQAKGTGELTQLLNSMLTAIKAISSAVRKAGLAHLYGIAGSVKKLDVLSNSLVINMLQSSYSTCVLVSEENKDAIITAKEKRGKYVVCFDPLDGSSNIDCLASIGTIFAIYRKEPSEKDALQCGRNIVAAGYALYGSATLVALSTGQGVDLFMLDPALGEFVLVEKDVKIKKKGKIYSLNEGYAKYFDAATTEYVQKKKFPEDGSAPYGARYVGSMVADVHRTLVYGGIFLYPANQKSPKGKLRLLYECNPVAYIIEQAGGLATTGTQPVLDVKPEAIHQRVPLILGSPEDVQEYLTCVQKN 334
                                    18        28        38        48        58    ||  75        85        95       105       115       125       135     ||149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329     
                                                                                 63|                                                                   141|                                                                                                                                                                                            
                                                                                  71                                                                    146                                                                                                                                                                                            

Chain C from PDB  Type:PROTEIN  Length:317
                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhh.......hhhhhhhhhhhhhhhhh..eeeeee......ee.hhh.eeeeeeeeeeeehhhhh.....eeeeeeeee....hhhhhh.hhh.eeeeeeeee...eeeeee....eeeeeee....eeeeeeeee.......eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5et6 C   9 DMLTLTRYVMEKGRQAKGTGELTQLLNSMLTAIKAISSAVRKAGLAHLYGIAGSVKKLDVLSNSLVINMLQSSYSTCVLVSEENKDAIITAKEKRGKYVVCFDPLDGSSNIDCLASIGTIFAIYRKTEPSEKDALQCGRNIVAAGYALYGSATLVALSTGQGVDLFMLDPALGEFVLVEKDVKIKKKGKIYSLNEGYAKYFDAATTEYVQKKKFPEDGSAPYGARYVGSMVADVHRTLVYGGIFLYPANQKSPKGKLRLLYECNPVAYIIEQAGGLATTGTQPVLDVKPEAIHQRVPLILGSPEDVQEYLTCVQKNQ 335
                                    18        28        38        48        58    ||  75        85        95       105       115       125       135      |148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       
                                                                                 63|                                                                    142|                                                                                                                                                                                             
                                                                                  71                                                                     146                                                                                                                                                                                             

Chain D from PDB  Type:PROTEIN  Length:315
                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhh.......hhhhhhhhhhhhhhhh...eeeeee......ee.hhh.eeeeeeeeeeee..........eeeeeeeee...hhhhhh.hhhhh.eeeeeee...eeeeee.....eeeeee....eeeeee..........eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5et6 D   9 DMLTLTRYVMEKGRQAKGTGELTQLLNSMLTAIKAISSAVRKAGLAHLYGIAGSVKKLDVLSNSLVINMLQSSYSTCVLVSEENKDAIITAKEKRGKYVVCFDPLDGSSNIDCLASIGTIFAIYRKEPSEKDALQCGRNIVAAGYALYGSATLVALSTGQGVDLFMLDPALGEFVLVEKDVKIKKKGKIYSLNEGYAKYFDAATTEYVQKKKFPEDGSAPYGARYVGSMVADVHRTLVYGGIFLYPANQKSPKGKLRLLYECNPVAYIIEQAGGLATTGTQPVLDVKPEAIHQRVPLILGSPEDVQEYLTCVQKN 334
                                    18        28        38        48        58    ||  75        85        95       105       115       125       135     ||149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329     
                                                                                 63|                                                                   141|                                                                                                                                                                                            
                                                                                  71                                                                    146                                                                                                                                                                                            

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ET6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ET6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ET6)

(-) Gene Ontology  (17, 17)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F16P2_HUMAN | O007573ifa 3ifc 4he0 4he1 4he2 5et5 5et7 5et8 5k54 5k55 5k56

(-) Related Entries Specified in the PDB File

3ifa HUMAN MUSCLE FRUCTOSE-1,6-BISPHOSPHATASE E69Q MUTANT IN T-STATE IN COMPLEX WITH AMP
3ifc HUMAN MUSCLE FRUCTOSE-1,6-BISPHOSPHATASE E69Q MUTANT IN T-STATE IN COMPLEX WITH AMP AND FRUCTOSE-6-PHOSPHATE
4he0 CRYSTAL STRUCTURE OF HUMAN MUSCLE FRUCTOSE-1,6-BISPHOSPHATASE
4he1 CRYSTAL STRUCTURE OF HUMAN MUSCLE FRUCTOSE-1,6-BISPHOSPHATASE Q32R MUTANT COMPLEX WITH FRUCTOSE-6-PHOSPHATE AND PHOSPHATE
4he2 CRYSTAL STRUCTURE OF HUMAN MUSCLE FRUCTOSE-1,6-BISPHOSPHATASE Q32R MUTANT COMPLEX WITH AMP