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(-) Description

Title :  HUMAN ALDEHYDE OXIDASE SNP S1271L
 
Authors :  C. Coelho, M. J. Romao, T. Santos-Silva
Date :  11 Nov 15  (Deposition) - 17 Feb 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.39
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Oxidoreductase, Drug Metabolism, Snp (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Foti, T. Hartmann, C. Coelho, T. Santos-Silva, M. J. Romao, S. Leimkuhler
Optimization Of The Expression Of Human Aldehyde Oxidase Fo Investigations Of Single-Nucleotide Polymorphisms.
Drug Metab. Dispos. V. 44 1277 2016
PubMed-ID: 26842593  |  Reference-DOI: 10.1124/DMD.115.068395

(-) Compounds

Molecule 1 - ALDEHYDE OXIDASE
    ChainsA
    EC Number1.2.3.1, 1.17.3.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneAOX1, AO
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymALDEHYDE OXIDASE 1,AZAHETEROCYCLE HYDROXYLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FES2Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3MOS1Ligand/IonDIOXOTHIOMOLYBDENUM(VI) ION
4MTE1Ligand/IonPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
Biological Unit 1 (4, 10)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FES4Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3MOS2Ligand/IonDIOXOTHIOMOLYBDENUM(VI) ION
4MTE2Ligand/IonPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:113 , CYS A:114 , GLY A:115 , CYS A:117 , CYS A:149 , CYS A:151 , MET A:753binding site for residue FES A 3001
2AC2SOFTWAREGLY A:43 , CYS A:44 , GLY A:45 , CYS A:49 , GLY A:50 , ALA A:51 , CYS A:52 , CYS A:74binding site for residue FES A 3002
3AC3SOFTWAREGLN A:113 , CYS A:151 , GLY A:805 , ALA A:806 , PHE A:807 , GLY A:808 , ARG A:921 , MET A:1047 , GLY A:1048 , GLN A:1049 , GLY A:1087 , GLY A:1088 , SER A:1089 , VAL A:1090 , VAL A:1091 , ALA A:1092 , GLN A:1203 , LEU A:1268 , MOS A:3005binding site for residue MTE A 3003
4AC4SOFTWAREGLY A:46 , PRO A:263 , VAL A:264 , MET A:266 , GLY A:267 , ASN A:268 , THR A:269 , SER A:270 , VAL A:271 , LEU A:344 , ALA A:345 , ALA A:353 , SER A:354 , GLY A:357 , HIS A:358 , HIS A:363 , SER A:366 , ASP A:367 , LEU A:411 , ARG A:429 , LEU A:438binding site for residue FAD A 3004
5AC5SOFTWAREGLN A:776 , PHE A:923 , GLY A:1087 , GLY A:1088 , GLU A:1270 , MTE A:3003binding site for residue MOS A 3005

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EPG)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:701 -Pro A:702
2Ser A:1304 -Pro A:1305

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EPG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EPG)

(-) Exons   (0, 0)

(no "Exon" information available for 5EPG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:1288
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeee......hhhhhhhhh..................eeeeeeee....eeeeeeee.hhhhhhhhh..eeehhhhhh......hhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhhhhhhh......hhhhhhhhhh........hhhhh...........hhhhhhhhh......eeee....eeee..hhhhhhhhhhhh..........hhhhhhhhh.....eee....hhhhh.eee...eeeee...hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....hhhhhhhh..eeeee....eeeee.hhhhhh...........eeeeeeee.....eeeeeeee..........eeeeeeee.........eeeeeee......eehhhhhhhhh....hhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhh.......eeeee...................hhhhhhh....hhhhh......eeeeeee.....eeeeeeehhhhhhh..eeeeehhhhhhhhh.........ee.....eeeeeee.hhhhhhhhhh..eeeeee........hhhhh.....eeeee.hhhhhh....eeeeeeeee...........eeeeee......eeeee...hhhhhhhhhhhhhh.hhh.eeeee..........hhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhh.....eeeeeeeee.....eeeeeeeeeeeee....hhhhhhhhhhh.......eeeeeeeeee............hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...eee.....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee....hhhhheeeeeee.....eeeee.......hhhhhhhhhhhhhh..hhh.ee...ee.............hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh....eeeeee.....eee....eee...eeeeeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh....ee.....ee.hhhhh....hhhhh..eeeeee........hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhh...hhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5epg A    4 ASELLFYVNGRKVIEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMISRYNPITKRIRHHPANACLIPICSLYGAAVTTVEGIGSTHTRIHPVQERIAKCHGTQCGFCTPGMVMSIYTLLRNHPEPTLDQLTDALGGNLCRCTGYRPIIDACKTFCKTPKLFAEEEFLPLDPTQELIFPPELMIMAEKQSQRTRVFGSERMMWFSPVTLKELLEFKFKYPQAPVIMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHAYNGLTLGAGLSLAQVKDILADVVQKLPEEKTQMYHALLKHLGTLAGSQIRNMASLGGHIISRHPDSDLNPILAVGNCTLNLLSKEGKRQIPLNEQFLSKCPNADLKPQEILVSVNIPYSRKWEFVSAFRQAQRQENALAIVNSGMRVFFGEGDGIIRELCISYGGVGPATICAKNSCQKLIGRHWNEQMLDIACRLILNEVSLLGSAPGGKVEFKRTLIISFLFKFYLEVSQILKKMDPVHYPSLADKYESALEDLHSHHCSTLKYQNPKQHPEDPIGHPIMHLSGVKHATGEAIYCDDMPLVDQELFLTFVTSSRAHAKIVSIDLSEALSMPGVVDIMTAEHLSDVNSFCKFLATDKVFCVGQLVCAVLADSEVQAKRAAKRVKIVYQDLEPLILTIEESIQSFKPERKLEYGNVDEAFKVVDQILEGEIHMGGQEHFYMETQSMLVVPKGEDQEMDVYVSTQFPKYIQDIVASTLKLPANKVMCHVRRVGGAFGGKVLKTGIIAAVTAFAANKHGRAVRCVLERGEDMLITGGRHPYLGKYKAGFMNDGRILALDMEHYSNAGASLSLFVIEMGLLKMDNAYKFPNLRCRGWACRTNLPSNTAFRGFGFPQAALITESCITEVAAKCGLSPEKVRIINMYKEIDQTPYKQEINAKNLIQCWRECMAMSSYSLRKVAVEKFNAENYWKKKGLAMVPLKFPVGLGSRAAGQAAALVHIYLDGSVLVTHGGIEMGQGVHTKMIQVVSRELRMPMSNVHLRGTSTETVPNANISGGSVVADLNGLAVKDACQTLLKRLEPIISKNPKGTWKDWAQTAFDESINLSAVGYFRGYESDMNWEKGEGQPFEYFVYGAACSEVEIDCLTGDHKNIRTDIVMDVGCSINPAIDIGQIEGAFIQGMGLYTIEELNYSPQGILHTRGPDQYKIPAICDMPTELHIALLPPSQNSNTLYSSKGLGELGVFLGCSVFFAIHDAVSAARQERGLHGPLTLNSPLTPEKIRMACEDKFTKMIPRDEPGSYVPWNV 1336
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163   ||  204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554   ||  565   ||  577       587       597       607       617       627       637       647      |663       673       683       693       703       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876   ||  888       898       908       918       928       938       948       958       968       978       988       998      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238      1248      1258      1268      1278      1288      1298      1308      1318      1328        
                                                                                                                                                                                             167|                                                                                                                                                                                                                                                                                                                                                                    558|      569|                                                                               654|                                                712|                                                                                                                                                                 880|                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                                                                                                                                                                                              199                                                                                                                                                                                                                                                                                                                                                                     560       572                                                                                661                                                 716                                                                                                                                                                  883                                                                                                                                                                                                                                                                                                                                                                                                                                                                     

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EPG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EPG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EPG)

(-) Gene Ontology  (21, 21)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AOXA_HUMAN | Q062784uhw 4uhx

(-) Related Entries Specified in the PDB File

4uhw