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(-) Description

Title :  CRYSTAL STRUCTURAL OF THE TSC1-TBC1D7 COMPLEX
 
Authors :  Z. Wang, J. Qin, W. Gong, W. Xu
Date :  01 Nov 15  (Deposition) - 02 Mar 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,E,F  (1x)
Biol. Unit 2:  B,C,D  (1x)
Keywords :  Tsc1, Tbc1D7, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Qin, Z. Wang, M. Hoogeveen-Westerveld, G. Shen, W. Gong, M. Nellist W. Xu
Structural Basis Of The Interaction Between Tuberous Sclerosis Complex 1 (Tsc1) And Tre2-Bub2-Cdc16 Domain Famil Member 7 (Tbc1D7).
J. Biol. Chem. V. 291 8591 2016
PubMed-ID: 26893383  |  Reference-DOI: 10.1074/JBC.M115.701870

(-) Compounds

Molecule 1 - TBC1 DOMAIN FAMILY MEMBER 7
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 18-293
    Gene: TBC1D7, TBC7, HSPC239
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CELL MIGRATION-INDUCING PROTEIN 23
 
Molecule 2 - HAMARTIN
    Chains: C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 939-992
    Gene: TSC1, KIAA0243, TSC
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TUBEROUS SCLEROSIS 1 PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A   EF
Biological Unit 2 (1x):  BCD  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5EJC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EJC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EJC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EJC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EJC)

(-) Exons   (0, 0)

(no "Exon" information available for 5EJC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh....hhhhhhhhhhhh.....hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh.......hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ejc A  22 VEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSmYRALVWKVLLGILPPHHESHAKVmmYRKEQYLDVLHALKVVRFVSDATPQAEVYLRmYQLESGKLPRSPSFPLEPDDEVFLAIAKAmEEmVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQYLNLEDGRLLTHLRmCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVmALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTP 289
                                    31        41        51  |     61        71      ||81        91       101       111       121       131       141  |    151       161       171       181       191  |    201       211       221       231       241       251       261       271       281        
                                                           54-MSE                  78-MSE                          111-MSE                       141-MSE                                              194-MSE                                                  251-MSE                                  
                                                                                    79-MSE                                                          144-MSE                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....hhhhhhhhhhhh.....hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh.......hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ejc B  21 GVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSmYRALVWKVLLGILPPHHESHAKVmmYRKEQYLDVLHALKVVRFVSDATPQAEVYLRmYQLESGKLPRSPSFPLEPDDEVFLAIAKAmEEmVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQYLNLEDGRLLTHLRmCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVmALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCG 287
                                    30        40        50   |    60        70       |80        90       100       110|      120       130       140|  |   150       160       170       180       190   |   200       210       220       230       240       250|      260       270       280       
                                                            54-MSE                  78-MSE                          111-MSE                       141-MSE                                              194-MSE                                                  251-MSE                                
                                                                                     79-MSE                                                          144-MSE                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:31
                                                               
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                 5ejc C 939 GQLQAAESRYEAQKRITQVFELEILDLYGRL 969
                                   948       958       968 


Chain D from PDB  Type:PROTEIN  Length:34
                                                                  
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                 5ejc D 938 GGQLQAAESRYEAQKRITQVFELEILDLYGRLEK 971
                                   947       957       967    


Chain E from PDB  Type:PROTEIN  Length:32
                                                                
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                 5ejc E 939 GQLQAAESRYEAQKRITQVFELEILDLYGRLE 970
                                   948       958       968  


Chain F from PDB  Type:PROTEIN  Length:39
                                                                       
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                 5ejc F 939 GQLQAAESRYEAQKRITQVFELEILDLYGRLEKDGLLKK 977
                                   948       958       968
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EJC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EJC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EJC)

(-) Gene Ontology  (64, 67)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TBCD7_HUMAN | Q9P0N9: 3qwl 4z6y
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