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(-) Description

Title :  CRYSTAL STRUCTURE OF HINMLR, A MERR FAMILY REGULATOR LACKING THE SENSOR DOMAIN, BOUND TO PALYNDROMIC PROMOTER DNA
 
Authors :  R. M. Counago, C. W. Chang, N. H. Chen, K. Y. Djoko, A. G. Mcewan, B. Kobe
Date :  26 Sep 15  (Deposition) - 29 Jun 16  (Release) - 31 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Transcription Factor, Merr, Thiol-Based Genetic Switch, Dna Untwisting, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. M. Counago, N. H. Chen, C. W. Chang, K. Y. Djoko, A. G. Mcewan, B. Kobe
Structural Basis Of Thiol-Based Regulation Of Formaldehyde Detoxification In H. Influenzae By A Merr Regulator With No Sensor Region.
Nucleic Acids Res. V. 44 6981 2016
PubMed-ID: 27307602  |  Reference-DOI: 10.1093/NAR/GKW543

(-) Compounds

Molecule 1 - UNCHARACTERIZED HTH-TYPE TRANSCRIPTIONAL REGULATOR HI_0186
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21DE(3)
    Expression System Taxid: 469008
    Gene: HI_0186
    Organism Scientific: HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM 11121 / KW20 / RD)
    Organism Taxid: 71421
    Strain: ATCC 51907 / DSM 11121 / KW20 / RD
 
Molecule 2 - 5'-D(*CP*TP*TP*AP*GP*AP*GP*TP*GP*CP*AP*CP*TP*CP*TP*AP*AP*G) -3'
    Chains: C, D
    Engineered: YES
    Organism Scientific: HAEMOPHILUS INFLUENZAE RD KW20
    Organism Taxid: 71421
    Other Details: MODIFIED PROMOTER ELEMENT FOR ADHC/NMLR GENES FROM HAEMOPHILUS INFLUENZAE.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5E01)

(-) Sites  (0, 0)

(no "Site" information available for 5E01)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E01)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5E01)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E01)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E01)

(-) Exons   (0, 0)

(no "Exon" information available for 5E01)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhh.hhhhhhhhhhh......ee.....ee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5e01 A   1 MTYTTAKAAEKIGISAYTLRFYDKEGLLPNVGRDEYGNRRFTDKDLQWLSLLQCLKNTGMSLKDIKRFAECTIIGDDTIEERLSLFENQTKNVKCQIAELKRYLDLLEYKLAFYQKAKALGSVKAV 126
                                    10        20        30        40        50        60        70        80        90       100       110       120      


Chain B from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh.hhhhhhhhhhh................hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e01 B   0 AMTYTTAKAAEKIGISAYTLRFYDKEGLLPNVGRDEYGNRRFTDKDLQWLSLLQCLKNTGMSLKDIKRFAECTIIGDDTIEERLSLFENQTKNVKCQIAELKRYLDLLEYKLAFYQKAKALGSVKAV 126
                                     9        19        29        39        49        59        69        79        89        99       109       119       


Chain C from PDB  Type:DNA  Length:18
                                                  
                 5e01 C   1 CTTAGAGTGCACTCTAAG  18
                                    10        


Chain D from PDB  Type:DNA  Length:18
                                                  
                 5e01 D   1 CTTAGAGTGCACTCTAAG  18
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E01)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E01)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E01)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Y186_HAEIN | P44558: 5d8c 5d90

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