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Title :   CONTEXT-INDEPENDENT ANTI-HYPUSINE ANTIBODY FABHPU24 IN COMPLEX WITH HYPUSINE

Authors :   Q. Zhai, P. J. Carter

Date :   16 Sep 15 (Deposition) - 20 Jan 16 (Release) - 04 May 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.99

Chains :   Asym. Unit : A,B,H,L
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: H,L  (1x)

Keywords :   Hypusine, Antibody, Fabhpu24, Eif5A, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Q. Zhai, M. He, A. Song, K. Deshayes, V. M. Dixit, P. J. Carter
Structural Analysis And Optimization Of Context-Independent Anti-Hypusine Antibodies.
J. Mol. Biol. V. 428 603 2016
PubMed-ID: 26778617 | Reference-DOI: 10.1016/J.JMB.2016.01.006

Molecule 1 - FAB HPU24 HEAVY CHAIN
	Chains	:	A, H
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Common	:	CHINESE HAMSTER
	Expression System Taxid	:	10029
	Organism Scientific	:	ORYCTOLAGUS CUNICULUS
	Organism Taxid	:	9986

Molecule 2 - FAB HPU24 LIGHT CHAIN
	Chains	:	B, L
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Common	:	CHINESE HAMSTER
	Expression System Taxid	:	10029
	Organism Scientific	:	ORYCTOLAGUS CUNICULUS
	Organism Taxid	:	9986

		1	2	3	4
Asymmetric Unit	:	A	B	H	L
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			H	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	5CT	2	Ligand/Ion	HYPUSINE
2	GOL	4	Ligand/Ion	GLYCEROL
3	PCA	2	Mod. Amino Acid	PYROGLUTAMIC ACID

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	5CT	1	Ligand/Ion	HYPUSINE
2	GOL	1	Ligand/Ion	GLYCEROL
3	PCA	1	Mod. Amino Acid	PYROGLUTAMIC ACID

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	5CT	1	Ligand/Ion	HYPUSINE
2	GOL	3	Ligand/Ion	GLYCEROL
3	PCA	1	Mod. Amino Acid	PYROGLUTAMIC ACID

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:52 , ASP A:100 , GLY A:100A , TYR A:100B , HOH A:323 , TYR B:28 , TRP B:32 , GLY B:91 , TYR B:92 , TYR B:93 , ASP B:95 , ASP B:96	binding site for residue 5CT B 301
2	AC2	SOFTWARE	GLN A:39 , PHE A:91 , LYS B:38 , GLY B:41 , GLN B:42 , HOH B:403	binding site for residue GOL B 302
3	AC3	SOFTWARE	ARG H:38 , ARG H:66	binding site for residue GOL H 301
4	AC4	SOFTWARE	GLN H:39 , PHE H:91 , LYS L:38 , GLY L:41	binding site for residue GOL L 301
5	AC5	SOFTWARE	SER H:187 , GLN H:189 , PRO H:190 , THR L:27A , VAL L:27B , TYR L:28 , ARG L:29 , TYR L:92 , TYR L:93 , HOH L:411	binding site for residue GOL L 302
6	AC6	SOFTWARE	TYR H:52 , ASP H:100 , GLY H:100A , TYR H:100B , TRP L:32 , TYR L:92 , TYR L:93 , ASP L:95 , ASP L:96 , HOH L:427	binding site for residue 5CT L 303

Asymmetric Unit

No.	Residues
1	A:22	-	A:92
2	A:127	-	B:211
3	A:140	-	A:193
4	B:23	-	B:88
5	B:80	-	B:170
6	B:134	-	B:193
7	H:22	-	H:92
8	H:140	-	H:193
9	L:23	-	L:88
10	L:80	-	L:170
11	L:134	-	L:193

Asymmetric Unit

No.	Residues
1	Leu A:146	-	Pro A:147
2	Glu A:148	-	Pro A:149
3	Gln A:189	-	Pro A:190
4	Ser B:9	-	Pro B:10
5	Phe B:140	-	Pro B:141
6	Leu H:146	-	Pro H:147
7	Glu H:148	-	Pro H:149
8	Gln H:189	-	Pro H:190
9	Ser L:9	-	Pro L:10
10	Phe L:140	-	Pro L:141

(no "SAP(SNP)/Variant" information available for 5DRN)

(no "PROSITE Motif" information available for 5DRN)

(no "Exon" information available for 5DRN)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee..hhhh.eeeeeee.....eeeeeeee.....eee.......eeeee...eeeeee...hhhhheeeeeeeee......eeeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh.....ee...ee.....eeeeeeeeee.....eeeeeeehhhheeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5drn A    1 xEQLKESGGRLVAPGTPLTLTCTVSGFDISDYAMIWVRQAPGKGLEWIGIIYGGSNKLAYAKWAKGRFTISRTSTTVDLKITSPTTEDTATYFCARGYGSMDGYDRLNLWGQGTLVTVSSGQPKGPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSSQPVTCNVAHPATNTKVDKTVA  209
                            |       10        20        30        40        50  |     59        69        79   |    88        98  |||||103       113       123       133       143       153       163       173       183       193       203      
                            |                                                 52A                            82A               100A||||                                                                                                             
                            1-PCA                                                                                               100B|||                                                                                                             
                                                                                                                                 100C||                                                                                                             
                                                                                                                                  100D|                                                                                                             
                                                                                                                                   100E

Chain B from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....eeee....eeeeeee...hhhhh.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee...hhhhhee...eeeeee......eeeee..hhhhhhh.eeeeeeeeeee....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5drn B    1 AAVLTQTPSPVSAAVGGTVTISCQSSETVYRGDWLSWFQKKPGQPPKLLIYDASYLASGVSSRFSGSGSGTHFTLTISGVQCDDAATYYCLGGYYDDADDTFGGGTEVVVKGDPVAPTVLIFPPAADQVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTQYNSHKEYTCKVTQGTTSVVQSFNRGDC  211
                                    10        20       |28        38        48        58        68        78        88       |96       106       116       126       136       146       156       166       176       186       196       206     
                                                     27A|                                                                  95A|                                                                                                                    
                                                      27B                                                                   95B

Chain H from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee..hhhh.eeeeeee......eeeeeee.....eee.......eeeee...eeeeee...hhhhheeeeeeeee......eeeeee...eeeee........eeeee.......eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh.eeeeeeehhhheeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5drn H    1 xEQLKESGGRLVAPGTPLTLTCTVSGFDISDYAMIWVRQAPGKGLEWIGIIYGGSNKLAYAKWAKGRFTISRTSTTVDLKITSPTTEDTATYFCARGYGSMDGYDRLNLWGQGTLVTVSSGQPKGPSVFPLAPCTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSSQPVTCNVAHPATNTKVDKTVA  209
                            |       10        20        30        40        50  |     59        69        79   |    88        98  |||||103       113       123   ||  136       146       156       166       176       186       196       206   
                            1-PCA                                             52A                            82A               100A||||                        127|                                                                              
                                                                                                                                100B|||                         131                                                                              
                                                                                                                                 100C||                                                                                                          
                                                                                                                                  100D|                                                                                                          
                                                                                                                                   100E

Chain L from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....eeee....eeeeeee...hhhhh.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee...hhhhhee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeeee..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5drn L    1 AAVLTQTPSPVSAAVGGTVTISCQSSETVYRGDWLSWFQKKPGQPPKLLIYDASYLASGVSSRFSGSGSGTHFTLTISGVQCDDAATYYCLGGYYDDADDTFGGGTEVVVKGDPVAPTVLIFPPAADQVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTQYNSHKEYTCKVTQGTTSVVQSFNRG  209
                                    10        20       |28        38        48        58        68        78        88       |96       106       116       126       136       146       156       166       176       186       196       206   
                                                     27A|                                                                  95A|                                                                                                                  
                                                      27B                                                                   95B

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5DRN)

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	Cis Peptide Bonds
		Gln A:189 - Pro A:190	[ RasMol ]
		Gln H:189 - Pro H:190	[ RasMol ]
		Glu A:148 - Pro A:149	[ RasMol ]
		Glu H:148 - Pro H:149	[ RasMol ]
		Leu A:146 - Pro A:147	[ RasMol ]
		Leu H:146 - Pro H:147	[ RasMol ]
		Phe B:140 - Pro B:141	[ RasMol ]
		Phe L:140 - Pro L:141	[ RasMol ]
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		Ser L:9 - Pro L:10	[ RasMol ]

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Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (6, 6)

SS Bonds (11, 11)

Cis Peptide Bonds (10, 10)

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