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(-) Description

Title :  STRUCTURAL MECHANISM OF NEK7 ACTIVATION BY NEK9-INDUCED DIMERISATION
 
Authors :  T. Haq, R. Bayliss
Date :  25 Aug 15  (Deposition) - 11 Nov 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.78
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Protein Kinase, Mitosis, Protein-Protein Interaction, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Haq, M. W. Richards, S. G. Burgess, P. Gallego, S. Yeoh, L. O'Regan, D. Reverter, J. Roig, A. M. Fry, R. Bayliss
Mechanistic Basis Of Nek7 Activation Through Nek9 Binding And Induced Dimerization.
Nat Commun V. 6 8771 2015
PubMed-ID: 26522158  |  Reference-DOI: 10.1038/NCOMMS9771

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE NEK7
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NEK7
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NEVER IN MITOSIS A-RELATED KINASE 7,NIMA-RELATED PROTEIN KINASE 7
 
Molecule 2 - SERINE/THREONINE-PROTEIN KINASE NEK9
    Chains: C, D
    EC Number: 2.7.11.1
    Engineered: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: NERCC1 KINASE,NEVER IN MITOSIS A-RELATED KINASE 9,NIMA- RELATED PROTEIN KINASE 9
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5DE2)

(-) Sites  (0, 0)

(no "Site" information available for 5DE2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DE2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DE2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DE2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DE2)

(-) Exons   (0, 0)

(no "Exon" information available for 5DE2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeeeeee...eeeeeeee.....eeeeeee......hhhhhhhhhhhhhhhh.........eeeeeee..eeeeee......hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee............hhhhhh....hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5de2 A  20 KALRPDMGYNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKFYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA 300
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 ||    203       213       223       233       243       253       263       273       283       293       
                                                                                                                                                                                           181|                                                                                                        
                                                                                                                                                                                            196                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeeeeee...eeeeeeee.....eeeeeee......hhhhhhhhhhhhhhh..........eeeeee....eeeeee....eehhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.......hhhhhh......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5de2 B  20 KALRPDMGYNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKFYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA 300
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179||     208       218       228       238       248       258       268       278       288       298  
                                                                                                                                                                                          180|                                                                                                    
                                                                                                                                                                                           200                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:16
                                                
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author .hhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 5de2 C 810 GWLRKELENAEFIPMP 825
                                   819      


Chain D from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author .hhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5de2 D 810 GWLRKELEN 818
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DE2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DE2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DE2)

(-) Gene Ontology  (28, 39)

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  NEK9_MOUSE | Q8K1R7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NEK7_HUMAN | Q8TDX7: 2wqm 2wqn

(-) Related Entries Specified in the PDB File

2wqm 2WQM CONTAINS NEK7
2wqn 2WQN CONTAINS NEK7 BOUND TO ADP