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(-) Description

Title :  CRYSTAL STRUCTURE OF SSB AND SSDNA COMPLEX FROM HOMO SAPIENS
 
Authors :  Y. H. Li, Z. Q. Gao, Y. H. Dong
Date :  17 Aug 15  (Deposition) - 17 Aug 16  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Single-Strand Dna Binding, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. H. Li, Z. Q. Gao, Y. H. Dong
Crystal Structure Of Ssb And Ssdna Complex From Homo Sapien
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SOSS COMPLEX SUBUNIT B1
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET21A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 1-109
    GeneNABP2, OBFC2B, SSB1, LP3587
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymNUCLEIC ACID-BINDING PROTEIN 2, OLIGONUCLEOTIDE/OLIGOSACCHARIDE-BINDING FOLD-CONTAINING PROTEIN 2B, SENSOR OF SINGLE-STRAND DNA COMPLEX SUBUNIT B1,SENSOR OF SSDNA SUBUNIT B1,SOSS-B1,SINGLE-STRANDED DNA-BINDING PROTEIN 1,HSSB1
 
Molecule 2 - DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3')
    ChainsC
    EngineeredYES
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1PEG2Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:45 , LYS A:46binding site for residue PEG A 200
2AC2SOFTWAREASP B:45 , LYS B:46binding site for residue PEG B 200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D8F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D8F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D8F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D8F)

(-) Exons   (0, 0)

(no "Exon" information available for 5D8F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh......eeeeeeeeeeeeeee.....eeeeeeeee..eeeeeeee...........eeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 5d8f A   4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSHHH 112
                                    13        23        33        43        53        63        73        83        93       103         

Chain B from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh......eeeeeeeeee...ee.....eeeeeeeee..eeeeeeee.hhhhhh....eeeeeeeeeeee..eeeee.....eeeeeeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 5d8f B   4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSHH 111
                                    13        23        33        43        53        63        73        83        93       103        

Chain C from PDB  Type:DNA  Length:3
                                   
                 5d8f C   1 TTT   3

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D8F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D8F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D8F)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SOSB1_HUMAN | Q9BQ154owt 4oww 4owx 5d8e

(-) Related Entries Specified in the PDB File

5d8e