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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN FKBD25 IN COMPLEX WITH FK506
 
Authors :  S. Rajan, A. Prakash, H. S. Yoon
Date :  13 Aug 15  (Deposition) - 06 Apr 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym./Biol. Unit :  A
Keywords :  Fk506, Fkbp25, Fkbp3, Immunophilin, Inhibitor, Isomerase-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Prakash, S. Rajan, H. S. Yoon
Crystal Structure Of The Fk506 Binding Domain Of Human Fkbp25 In Complex With Fk506.
Protein Sci. V. 25 905 2016
PubMed-ID: 26749369  |  Reference-DOI: 10.1002/PRO.2875

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP3
    Chains: A
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET29B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 109-224
    Gene: FKBP3, FKBP25
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PPIASE FKBP3,25 KDA FK506-BINDING PROTEIN,FKBP-25,FK506- BINDING PROTEIN 3,FKBP-3,IMMUNOPHILIN FKBP25,RAPAMYCIN-SELECTIVE 25 KDA IMMUNOPHILIN,ROTAMASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
16JZ2Ligand/Ion3,6,9,12,15-PENTAOXAHEPTADECANE
2FK51Ligand/Ion8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:135 , PHE A:145 , ASP A:146 , LEU A:162 , LYS A:170 , VAL A:171 , ILE A:172 , TRP A:175 , TYR A:198 , GLN A:203 , ALA A:206 , ILE A:208 , PHE A:216 , 6JZ A:303 , HOH A:405 , HOH A:420 , HOH A:439binding site for residue FK5 A 301
2AC2SOFTWAREGLY A:169 , LYS A:170binding site for residue 6JZ A 302
3AC3SOFTWAREPRO A:194 , GLU A:195 , GLY A:199 , LYS A:200 , LYS A:201 , ASN A:211 , FK5 A:301binding site for residue 6JZ A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D75)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D75)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D75)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D75)

(-) Exons   (0, 0)

(no "Exon" information available for 5D75)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee............eeeeeeeeee....eeee..............eeee......hhhhhhhhh......eeeeee.hhhh................eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 5d75 A 109 PKYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDIDLEHH 228
                                   118       128       138       148       158       168       178       188       198       208       218       228
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D75)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D75)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D75)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  5d75
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  FKBP3_HUMAN | Q00688
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FKBP3_HUMAN | Q00688: 1pbk 2kfv 2mph 5gpg

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