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(-) Description

Title :  CRYSTAL STRUCTURE OF VACCINIA VIRUS C7
 
Authors :  B. E. Krumm, X. Meng, Y. Li, Y. Xiang, J. Deng
Date :  30 Jul 15  (Deposition) - 18 Nov 15  (Release) - 16 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  B
Biol. Unit 1:  B  (1x)
Biol. Unit 2:  B  (3x)
Keywords :  Host-Range, Beta-Sandwich, Poxvirus, Vaccinia, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Meng, B. Krumm, Y. Li, J. Deng, Y. Xiang
Structural Basis For Antagonizing A Host Restriction Factor By C7 Family Of Poxvirus Host-Range Proteins.
Proc. Natl. Acad. Sci. Usa V. 112 14858 2015
PubMed-ID: 26578811  |  Reference-DOI: 10.1073/PNAS.1515354112

(-) Compounds

Molecule 1 - INTERFERON ANTAGONIST C7
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MVA018L, ACAM3000_MVA_018, C7L
    Organism Common: VACV
    Organism Scientific: VACCINIA VIRUS (STRAIN ANKARA)
    Organism Taxid: 126794
    Strain: ANKARA
    Synonym: C7L, HOST RANGE PROTEIN 2

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : B
Biological Unit 1 (1x): B
Biological Unit 2 (3x): B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER B:36 , ASN B:37 , TYR B:39 , LEU B:90 , TYR B:91 , ASN B:92 , LYS B:93binding site for residue GOL B 201
2AC2SOFTWARETYR B:80 , TYR B:143 , HOH B:353binding site for residue GOL B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CYW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1His B:138 -Pro B:139

 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee...eeee..........eeeeeee.....eeeeeeeee............eeee..ee...eeeee....eeeeeeee....eeeeeee.....hhhhhh..eeeee....eeeeee......eee......hhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cyw B   1 MGIQHEFDIIINGDIALRNLQLHKGDNYGCKLKIISNDYKKLKFRFIIRPDWSEIDEVKGLTVFANNYAVKVNKVDDTFYYVIYEAVIHLYNKKTEILIYSDDENELFKHYYPYISLNMISKKYKVKEENYSSPYIEHPLIPYRDYESM 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CYW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CYW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CYW)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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5cz3