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(-) Description

Title :  GTPASE DOMAIN OF SEPTIN 9 IN COMPLEX WITH GTP-GAMMA-S
 
Authors :  S. S. Matos, D. A. Leonardo, H. M. Pereira, E. Horjales, A. P. U. Araujo, R. C. Garratt
Date :  30 Jul 15  (Deposition) - 03 Aug 16  (Release) - 03 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.89
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Septin 9 Gtpase Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. S. Matos, D. A. Leonardo, H. M. Pereira, E. Horjales, A. P. U. Araujo, R. C. Garratt
Gtpase Domain Of Septin 9 In Complex With Gtp-Gamma-S
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SEPTIN-9
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneSEPT9, KIAA0991, MSF
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMLL SEPTIN-LIKE FUSION PROTEIN MSF-A,MLL SEPTIN-LIKE FUSION PROTEIN,OVARIAN/BREAST SEPTIN,OV/BR SEPTIN,SEPTIN D1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1GSP4Ligand/Ion5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
2MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GSP1Ligand/Ion5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GSP1Ligand/Ion5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1GSP1Ligand/Ion5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1GSP1Ligand/Ion5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:32 , GLY A:33 , LEU A:34 , GLY A:35 , LYS A:36 , SER A:37 , THR A:38 , THR A:64 , LYS A:170 , ASP A:172 , VAL A:225 , GLY A:226 , ARG A:241 , MG A:302 , THR B:143 , HIS B:145 , THR B:173 , GLU B:178binding site for residue GSP A 301
2AC2SOFTWARESER A:37 , THR A:64 , ASP A:87 , GSP A:301binding site for residue MG A 302
3AC3SOFTWARETHR A:143 , HIS A:145 , THR A:173 , GLU A:178 , SER B:32 , GLY B:33 , LEU B:34 , GLY B:35 , LYS B:36 , SER B:37 , THR B:38 , THR B:64 , LYS B:170 , ASP B:172 , VAL B:225 , GLY B:226 , MG B:302binding site for residue GSP B 301
4AC4SOFTWARESER B:37 , THR B:64 , ASP B:87 , GSP B:301binding site for residue MG B 302
5AC5SOFTWARESER C:32 , GLY C:33 , LEU C:34 , GLY C:35 , LYS C:36 , SER C:37 , THR C:38 , LYS C:63 , THR C:64 , LYS C:170 , ASP C:172 , VAL C:225 , GLY C:226 , MG C:302 , THR D:143 , HIS D:145 , THR D:173 , GLU D:178binding site for residue GSP C 301
6AC6SOFTWARESER C:37 , THR C:64 , ASP C:87 , GSP C:301binding site for residue MG C 302
7AC7SOFTWARETHR C:143 , HIS C:145 , THR C:173 , GLU C:178 , SER D:32 , GLY D:33 , LEU D:34 , GLY D:35 , LYS D:36 , SER D:37 , THR D:38 , THR D:64 , GLY D:90 , LYS D:170 , ASP D:172 , VAL D:225 , GLY D:226 , MG D:302binding site for residue GSP D 301
8AC8SOFTWARESER D:37 , THR D:64 , ASP D:87 , GSP D:301binding site for residue MG D 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CYP)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Tyr A:198 -Pro A:199
2Ile A:220 -Pro A:221
3Tyr B:198 -Pro B:199
4Ile B:220 -Pro B:221
5Tyr C:198 -Pro C:199
6Ile C:220 -Pro C:221
7Tyr D:198 -Pro D:199
8Ile D:220 -Pro D:221

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CYP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CYP)

(-) Exons   (0, 0)

(no "Exon" information available for 5CYP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee....hhhhhhhhhhh..........eeeeeeee...eeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhh..............eeeeeee......hhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhh...ee......................hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cyp A  18 MKQGFEFNIMVVGQSGLGKSTLINTLFKSKRIPKTIEIKSITHDIEEGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVHFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGSDHEILGRKTIEVENTTHCEFAYLRDLLIRTHMQNIKDITSSIHFEAYRVKR 289
                                    27        37        47|       69      ||80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230|   || 251       261       271       281        
                                                        47|              76|                                                                                                                                                     230| 242|                                          
                                                         60               78                                                                                                                                                      238  247                                          

Chain B from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee....hhhhhhhhhhh........eeeeeee.....eeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhh..............eeeeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhh...ee....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cyp B  19 KQGFEFNIMVVGQSGLGKSTLINTLFKRIPKTIEIKSITHDIEKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVHFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGEFAYLRDLLIRTHMQNIKDITSSIHFEAYRVKRL 290
                                    28        38      ||62        72  ||    83        93       103       113       123       133       143       153       163       173       183       193       203       213       223  ||   263       273       283       
                                                     45|             75|                                                                                                                                                  226|                                 
                                                      60              77                                                                                                                                                   257                                 

Chain C from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee....hhhhhhhhhhh..........eeeeeeee...eeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhh..............eeeeeee......hhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhh...ee...........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cyp C  19 KQGFEFNIMVVGQSGLGKSTLINTLFKSERIPKTIEIKSITHDIEEGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVHFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGSVENTTHCEFAYLRDLLIRTHMQNIKDITSSIHFEAYRVKRLN 291
                                    28        38       |60        70     || 81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     ||253       263       273       283        
                                                      46|               76|                                                                                                                                                  227|                                         
                                                       59                78                                                                                                                                                   250                                         

Chain D from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee....hhhhhhhhhhh........eeeeeee..eeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhh..............eeeeeee......hhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhh...ee....hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cyp D  19 KQGFEFNIMVVGQSGLGKSTLINTLFKRIPKTIEIKSITHDIEVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVHFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGCEFAYLRDLLIRTHMQNIKDITSSIHFEAYRVKRLN 291
                                    28        38      ||62        72  ||    85        95       105       115       125       135       145       155       165       175       185       195       205       215       225||     264       274       284       
                                                     45|             75|                                                                                                                                                226|                                   
                                                      60              79                                                                                                                                                 256                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CYP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CYP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CYP)

(-) Gene Ontology  (16, 16)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SEPT9_HUMAN | Q9UHD84yqf 5cyo

(-) Related Entries Specified in the PDB File

4yqf 5cyo