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(-) Description

Title :  HIGH RESOLUTION SEPTIN 9 GTPASE DOMAIN IN COMPLEX WITH GDP
 
Authors :  S. S. Matos, D. A. Leonardo, H. M. Pereira, E. Horjales, A. P. U. Araujo, R. C. Garratt
Date :  30 Jul 15  (Deposition) - 03 Aug 16  (Release) - 03 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Septin 9 Gtpase Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. S. Matos, D. A. Leonardo, H. M. Pereira, E. Horjales, A. P. U. Araujo, R. C. Garratt
High Resolution Septin 9 Gtpase Domain In Complex With Gdp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SEPTIN-9
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPLASMID
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneSEPT9, KIAA0991, MSF
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMLL SEPTIN-LIKE FUSION PROTEIN MSF-A,MLL SEPTIN-LIKE FUSION PROTEIN,OVARIAN/BREAST SEPTIN,OV/BR SEPTIN,SEPTIN D1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:32 , GLY A:33 , LEU A:34 , GLY A:35 , LYS A:36 , SER A:37 , THR A:38 , LYS A:170 , ASP A:172 , VAL A:225 , GLY A:226 , ARG A:241 , MG A:302 , HOH A:413 , HOH A:420 , HOH A:423 , HOH A:428 , HOH A:443 , HOH A:451 , HOH A:471 , THR B:143 , HIS B:145 , THR B:173 , GLU B:178binding site for residue GDP A 301
2AC2SOFTWARESER A:37 , THR A:64 , GDP A:301 , HOH A:413 , HOH A:420 , HOH A:423binding site for residue MG A 302
3AC3SOFTWARETHR A:143 , HIS A:145 , THR A:173 , GLU A:178 , SER B:32 , GLY B:33 , LEU B:34 , GLY B:35 , LYS B:36 , SER B:37 , THR B:38 , LYS B:170 , ASP B:172 , VAL B:225 , GLY B:226 , ARG B:241 , MG B:302 , HOH B:407 , HOH B:408 , HOH B:419 , HOH B:442 , HOH B:443 , HOH B:444 , HOH B:483binding site for residue GDP B 301
4AC4SOFTWARESER B:37 , THR B:64 , GDP B:301 , HOH B:407 , HOH B:419 , HOH B:444binding site for residue MG B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CYO)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Tyr A:198 -Pro A:199
2Ile A:220 -Pro A:221
3Tyr B:198 -Pro B:199
4Ile B:220 -Pro B:221

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CYO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CYO)

(-) Exons   (0, 0)

(no "Exon" information available for 5CYO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....hhhhhhhhhhhhhh......ee..........eeeeeeeee..eeeeeeeee.............hhhhhhhhhhhhhhhhhhhhh.............eeeeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhhhh.ee.....eeeee..eeeeeee...eee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cyo A  20 QGFEFNIMVVGQSGLGKSTLINTLFKSKISRKSQPTSEERIPKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVHFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGSDHEYQVNGKRILGRKTKGTIEVENTTHCEFAYLRDLLIRTHMQNIKDITSSIHFEAYRVKRLNEG 293
                                    29        39        49  ||    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240   ||  251       261       271       281       291  
                                                           52|                                                                                                                                                                                           244|                                               
                                                            54                                                                                                                                                                                            246                                               

Chain B from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee.....hhhhhhhhhhhh..........eeeeeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhhh.............eeeeee.......hhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhhhh.ee..........eee....eee.......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cyo B  21 GFEFNIMVVGQSGLGKSTLINTLFKSKERIPKTIEIKSITHDIERMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVHFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGSDHEYILGRKTKWGTIEVENTTHCEFAYLRDLLIRTHMQNIKDITSSIHFEAYRVKRLNEG 293
                                    30        40      ||61        71   ||   85        95       105       115       125       135       145       155       165       175       185       195       205       215       225     ||241       251       261       271       281       291  
                                                     47|              75|                                                                                                                                                    231|                                                       
                                                      59               80                                                                                                                                                     238                                                       

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CYO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CYO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CYO)

(-) Gene Ontology  (16, 16)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SEPT9_HUMAN | Q9UHD84yqf 5cyp

(-) Related Entries Specified in the PDB File

4yqf GTPASE DOMAIN OF SEPTIN 9